Hb_000080_180

Information

Type -
Description -
Location Contig80: 128994-129572
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58743: 128681-129011 , PASA_asmbl_58744: 129054-129815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_180 0.0 - - -
2 Hb_000732_280 0.1716783894 - - hypothetical protein B456_009G173700 [Gossypium raimondii]
3 Hb_007447_020 0.2235817566 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
4 Hb_031866_050 0.2375831237 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
5 Hb_051437_010 0.2415428937 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
6 Hb_005318_020 0.2482140101 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
7 Hb_060458_010 0.2571195435 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000976_030 0.263074696 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
9 Hb_178041_010 0.2656929106 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
10 Hb_000683_090 0.2667647088 - - stress enhanced protein [Medicago truncatula]
11 Hb_002205_060 0.2745417164 - - -
12 Hb_051424_010 0.280422132 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
13 Hb_027295_040 0.280907885 - - hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
14 Hb_000617_170 0.2827656447 - - -
15 Hb_003030_040 0.2841411795 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
16 Hb_001252_200 0.2857627674 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
17 Hb_074979_030 0.2859462759 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
18 Hb_058702_020 0.2865879477 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
19 Hb_002154_070 0.2868356705 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
20 Hb_169170_010 0.2919284837 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_000080_180 Hb_000080_180 Hb_000732_280 Hb_000732_280 Hb_000080_180--Hb_000732_280 Hb_007447_020 Hb_007447_020 Hb_000080_180--Hb_007447_020 Hb_031866_050 Hb_031866_050 Hb_000080_180--Hb_031866_050 Hb_051437_010 Hb_051437_010 Hb_000080_180--Hb_051437_010 Hb_005318_020 Hb_005318_020 Hb_000080_180--Hb_005318_020 Hb_060458_010 Hb_060458_010 Hb_000080_180--Hb_060458_010 Hb_000732_280--Hb_005318_020 Hb_000732_280--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_000732_280--Hb_000683_090 Hb_000340_330 Hb_000340_330 Hb_000732_280--Hb_000340_330 Hb_000732_280--Hb_060458_010 Hb_007447_020--Hb_031866_050 Hb_007447_020--Hb_000683_090 Hb_007447_020--Hb_005318_020 Hb_169170_010 Hb_169170_010 Hb_007447_020--Hb_169170_010 Hb_122567_020 Hb_122567_020 Hb_007447_020--Hb_122567_020 Hb_079978_010 Hb_079978_010 Hb_007447_020--Hb_079978_010 Hb_003030_040 Hb_003030_040 Hb_031866_050--Hb_003030_040 Hb_003656_150 Hb_003656_150 Hb_031866_050--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_031866_050--Hb_007188_030 Hb_031866_050--Hb_000683_090 Hb_177103_010 Hb_177103_010 Hb_031866_050--Hb_177103_010 Hb_051424_010 Hb_051424_010 Hb_051437_010--Hb_051424_010 Hb_002742_070 Hb_002742_070 Hb_051437_010--Hb_002742_070 Hb_178041_010 Hb_178041_010 Hb_051437_010--Hb_178041_010 Hb_009119_040 Hb_009119_040 Hb_051437_010--Hb_009119_040 Hb_008029_020 Hb_008029_020 Hb_051437_010--Hb_008029_020 Hb_009119_020 Hb_009119_020 Hb_051437_010--Hb_009119_020 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_005318_020--Hb_000683_090 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_141296_010 Hb_141296_010 Hb_060458_010--Hb_141296_010 Hb_002126_020 Hb_002126_020 Hb_060458_010--Hb_002126_020 Hb_006422_030 Hb_006422_030 Hb_060458_010--Hb_006422_030 Hb_000082_020 Hb_000082_020 Hb_060458_010--Hb_000082_020 Hb_060458_010--Hb_005318_020 Hb_114079_010 Hb_114079_010 Hb_060458_010--Hb_114079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45062 3.10774 0.17479 7.93969 4.32217 27.4216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.779435 0 2.80854 0.633244 5.11913

CAGE analysis