Hb_000080_190

Information

Type -
Description -
Location Contig80: 160105-176853
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58745: 159502-164813 , PASA_asmbl_58746: 160252-164161 , PASA_asmbl_58748: 165563-171355 , PASA_asmbl_58750: 172393-176620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_190 0.0 - - -
2 Hb_002687_110 0.0659152251 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
3 Hb_005625_020 0.0698543632 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
4 Hb_000898_040 0.0825635514 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_004738_040 0.085109108 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
6 Hb_009048_040 0.0871328479 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
7 Hb_000409_020 0.0899281894 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
8 Hb_000359_010 0.0907680708 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
9 Hb_006472_010 0.0914714904 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
10 Hb_002769_050 0.0931673638 - - PREDICTED: endophilin-A1 [Jatropha curcas]
11 Hb_003683_160 0.0965840061 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
12 Hb_188279_010 0.1012354998 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
13 Hb_032215_050 0.1016884126 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
14 Hb_000431_010 0.1024186875 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
15 Hb_001051_100 0.1028479202 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
16 Hb_004109_090 0.1030017999 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_011316_040 0.1040425698 - - peptidase, putative [Ricinus communis]
18 Hb_003943_040 0.1042916464 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001085_170 0.1043009517 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
20 Hb_001277_330 0.1046259984 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]

Gene co-expression network

sample Hb_000080_190 Hb_000080_190 Hb_002687_110 Hb_002687_110 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_002687_110--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_005625_020--Hb_002687_110 Hb_002769_050 Hb_002769_050 Hb_005625_020--Hb_002769_050 Hb_005625_020--Hb_004738_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_000898_040--Hb_000409_020 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000510_320 Hb_000510_320 Hb_004738_040--Hb_000510_320 Hb_004738_040--Hb_001277_330 Hb_004738_040--Hb_000409_020 Hb_004738_040--Hb_000431_010 Hb_005754_060 Hb_005754_060 Hb_009048_040--Hb_005754_060 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.82386 0.952007 1.77333 2.69241 4.39217 5.52338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.02795 4.21963 9.63424 2.34878 2.58976

CAGE analysis