Hb_000081_020

Information

Type -
Description -
Location Contig81: 45563-48922
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G1380000
description hypothetical protein
nr
ID XP_010468206.1
description PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
swissprot
ID -
description -
trembl
ID M1CU64
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029084 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59197: 46086-74327 , PASA_asmbl_59199: 48419-75458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000081_020 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
2 Hb_005064_040 0.055869833 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
3 Hb_000539_080 0.0594720927 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
4 Hb_076895_020 0.0897828317 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
5 Hb_031340_030 0.0902729532 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
6 Hb_000238_060 0.0917773132 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
7 Hb_005228_170 0.0942395386 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_000140_260 0.0981424785 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
9 Hb_000497_120 0.1024703266 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000948_070 0.1043701034 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
11 Hb_000984_080 0.1061648949 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
12 Hb_004200_040 0.1089757411 - - laccase, putative [Ricinus communis]
13 Hb_002110_270 0.1092654649 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
14 Hb_000205_210 0.1099417506 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
15 Hb_027141_010 0.1115576955 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_001405_100 0.1121366064 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
17 Hb_006006_070 0.1147926203 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_002081_040 0.1150219172 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
19 Hb_002671_110 0.1156731861 - - PREDICTED: remorin-like [Jatropha curcas]
20 Hb_000487_240 0.1165039618 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]

Gene co-expression network

sample Hb_000081_020 Hb_000081_020 Hb_005064_040 Hb_005064_040 Hb_000081_020--Hb_005064_040 Hb_000539_080 Hb_000539_080 Hb_000081_020--Hb_000539_080 Hb_076895_020 Hb_076895_020 Hb_000081_020--Hb_076895_020 Hb_031340_030 Hb_031340_030 Hb_000081_020--Hb_031340_030 Hb_000238_060 Hb_000238_060 Hb_000081_020--Hb_000238_060 Hb_005228_170 Hb_005228_170 Hb_000081_020--Hb_005228_170 Hb_000497_120 Hb_000497_120 Hb_005064_040--Hb_000497_120 Hb_005064_040--Hb_031340_030 Hb_005064_040--Hb_000539_080 Hb_159015_010 Hb_159015_010 Hb_005064_040--Hb_159015_010 Hb_000140_260 Hb_000140_260 Hb_005064_040--Hb_000140_260 Hb_000539_080--Hb_076895_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_002110_270 Hb_002110_270 Hb_000539_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_000539_080--Hb_006006_070 Hb_027141_010 Hb_027141_010 Hb_000539_080--Hb_027141_010 Hb_076895_020--Hb_002110_270 Hb_076895_020--Hb_006006_070 Hb_076895_020--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_076895_020--Hb_000984_080 Hb_000758_030 Hb_000758_030 Hb_076895_020--Hb_000758_030 Hb_031340_030--Hb_000497_120 Hb_031340_030--Hb_000539_080 Hb_031340_030--Hb_000140_260 Hb_002999_090 Hb_002999_090 Hb_031340_030--Hb_002999_090 Hb_001405_100 Hb_001405_100 Hb_000238_060--Hb_001405_100 Hb_000237_150 Hb_000237_150 Hb_000238_060--Hb_000237_150 Hb_000852_050 Hb_000852_050 Hb_000238_060--Hb_000852_050 Hb_002671_110 Hb_002671_110 Hb_000238_060--Hb_002671_110 Hb_000238_060--Hb_005228_170 Hb_002081_040 Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_002671_110 Hb_005218_070 Hb_005218_070 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27748 0.0983762 1.10413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.18375 0.201916

CAGE analysis