Hb_000081_030

Information

Type -
Description -
Location Contig81: 72311-75952
Sequence    

Annotation

kegg
ID cit:102624501
description probable peptide/nitrate transporter At5g62680-like
nr
ID CDX87266.1
description BnaC09g05810D [Brassica napus]
swissprot
ID Q84WG0
description Protein NRT1/ PTR FAMILY 8.4 OS=Arabidopsis thaliana GN=NPF8.4 PE=2 SV=2
trembl
ID M0SYN2
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59197: 46086-74327 , PASA_asmbl_59198: 74593-74896 , PASA_asmbl_59199: 48419-75458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000081_030 0.0 - - BnaC09g05810D [Brassica napus]
2 Hb_000230_160 0.0727014683 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
3 Hb_000286_030 0.0801275802 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_000761_030 0.0863880663 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
5 Hb_148817_010 0.0914805495 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
6 Hb_001856_150 0.0918287179 - - -
7 Hb_006314_020 0.0978210318 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
8 Hb_003058_180 0.1033209603 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
9 Hb_014115_010 0.1106673412 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_001821_030 0.1238170777 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
11 Hb_006120_010 0.1256222536 - - invertase inhibitor [Manihot esculenta]
12 Hb_161981_010 0.1276184214 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
13 Hb_004875_040 0.1281533053 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
14 Hb_000521_350 0.1288348708 - - unnamed protein product [Vitis vinifera]
15 Hb_046191_010 0.1299117427 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_028008_030 0.1309449883 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
17 Hb_086122_030 0.1340576238 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
18 Hb_000487_140 0.1365778768 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_020805_110 0.1367381748 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
20 Hb_005056_030 0.1371265834 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000081_030 Hb_000081_030 Hb_000230_160 Hb_000230_160 Hb_000081_030--Hb_000230_160 Hb_000286_030 Hb_000286_030 Hb_000081_030--Hb_000286_030 Hb_000761_030 Hb_000761_030 Hb_000081_030--Hb_000761_030 Hb_148817_010 Hb_148817_010 Hb_000081_030--Hb_148817_010 Hb_001856_150 Hb_001856_150 Hb_000081_030--Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_000081_030--Hb_006314_020 Hb_003058_180 Hb_003058_180 Hb_000230_160--Hb_003058_180 Hb_000230_160--Hb_001856_150 Hb_000230_160--Hb_000286_030 Hb_028008_030 Hb_028008_030 Hb_000230_160--Hb_028008_030 Hb_000230_160--Hb_006314_020 Hb_000172_740 Hb_000172_740 Hb_000286_030--Hb_000172_740 Hb_000286_030--Hb_001856_150 Hb_000286_030--Hb_006314_020 Hb_001863_080 Hb_001863_080 Hb_000286_030--Hb_001863_080 Hb_005056_030 Hb_005056_030 Hb_000761_030--Hb_005056_030 Hb_006268_010 Hb_006268_010 Hb_000761_030--Hb_006268_010 Hb_000761_030--Hb_000230_160 Hb_000487_140 Hb_000487_140 Hb_000761_030--Hb_000487_140 Hb_014115_010 Hb_014115_010 Hb_000761_030--Hb_014115_010 Hb_095532_010 Hb_095532_010 Hb_148817_010--Hb_095532_010 Hb_000521_350 Hb_000521_350 Hb_148817_010--Hb_000521_350 Hb_004875_040 Hb_004875_040 Hb_148817_010--Hb_004875_040 Hb_000032_330 Hb_000032_330 Hb_148817_010--Hb_000032_330 Hb_148817_010--Hb_006314_020 Hb_001856_150--Hb_006314_020 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_003171_070 Hb_003171_070 Hb_001856_150--Hb_003171_070 Hb_001856_150--Hb_004875_040 Hb_003371_040 Hb_003371_040 Hb_006314_020--Hb_003371_040 Hb_006314_020--Hb_003171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00916726 6.16193 0.308277 15.6219 0.00917912 0.0349842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0208243 0 0.0622613 17.9672 0.589897

CAGE analysis