Hb_000081_160

Information

Type -
Description -
Location Contig81: 315018-353274
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09210g
description POPTRDRAFT_852811; hypothetical protein
nr
ID XP_012066873.1
description PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
swissprot
ID B3H6K1
description Uncharacterized protein At4g17910 OS=Arabidopsis thaliana GN=At4g17910 PE=2 SV=2
trembl
ID A0A067L4Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01602 PE=4 SV=1
Gene Ontology
ID GO:0005789
description gpi-anchored wall transfer protein isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59203: 314462-314627 , PASA_asmbl_59204: 348355-348668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000081_160 0.0 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
2 Hb_001252_130 0.0561291307 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
3 Hb_000215_110 0.0588393842 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
4 Hb_002641_060 0.0619984221 - - prefoldin subunit, putative [Ricinus communis]
5 Hb_001318_280 0.062536004 - - Protein FAM18B, putative [Ricinus communis]
6 Hb_000431_170 0.0627252869 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
7 Hb_001599_040 0.0639440359 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
8 Hb_008847_030 0.0651425936 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
9 Hb_001279_150 0.0652898231 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
10 Hb_000580_180 0.0667860482 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000599_250 0.0681798593 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_004934_100 0.0683541402 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000441_200 0.0684891723 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_008453_030 0.0693834092 - - Thioredoxin superfamily protein [Theobroma cacao]
15 Hb_007017_030 0.0697444639 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
16 Hb_031862_100 0.0698375773 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001946_400 0.0700378303 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
18 Hb_156279_020 0.0703168624 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_026198_070 0.0705432455 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
20 Hb_000054_090 0.071030956 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000081_160 Hb_000081_160 Hb_001252_130 Hb_001252_130 Hb_000081_160--Hb_001252_130 Hb_000215_110 Hb_000215_110 Hb_000081_160--Hb_000215_110 Hb_002641_060 Hb_002641_060 Hb_000081_160--Hb_002641_060 Hb_001318_280 Hb_001318_280 Hb_000081_160--Hb_001318_280 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_001599_040 Hb_001599_040 Hb_000081_160--Hb_001599_040 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_001971_010 Hb_001971_010 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_001318_280--Hb_008616_050 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_001318_280--Hb_002641_060 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000390_300 Hb_000390_300 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_005730_120 Hb_005730_120 Hb_001599_040--Hb_005730_120 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.7074 4.80339 6.2477 9.97294 7.16395 7.97835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.56206 12.1362 7.79654 8.15698 6.99769

CAGE analysis