Hb_000082_020

Information

Type -
Description -
Location Contig82: 71828-73145
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000082_020 0.0 - - -
2 Hb_041025_010 0.0892649558 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
3 Hb_114079_010 0.1257546855 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
4 Hb_046120_010 0.1515699447 - - -
5 Hb_007083_020 0.1696047053 - - hypothetical protein F775_15403 [Aegilops tauschii]
6 Hb_183522_010 0.1705124102 - - Far upstream element-binding protein, putative [Ricinus communis]
7 Hb_106415_010 0.1883702965 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
8 Hb_051424_010 0.1922950921 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
9 Hb_033385_010 0.1940226139 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
10 Hb_068014_010 0.194069854 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
11 Hb_025905_020 0.1961672997 - - major allergen Pru ar 1-like [Jatropha curcas]
12 Hb_010964_020 0.1963140052 - - RNA helicase [Arabidopsis thaliana]
13 Hb_001222_040 0.1963853454 - - -
14 Hb_060458_010 0.202290442 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001623_290 0.2083423595 - - unknown [Populus trichocarpa]
16 Hb_001231_070 0.2108009698 - - -
17 Hb_003030_040 0.211136797 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
18 Hb_001623_300 0.2120185911 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
19 Hb_019053_010 0.2172244211 - - -
20 Hb_169505_010 0.2177223144 - - hypothetical protein JCGZ_04480 [Jatropha curcas]

Gene co-expression network

sample Hb_000082_020 Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_000082_020--Hb_041025_010 Hb_114079_010 Hb_114079_010 Hb_000082_020--Hb_114079_010 Hb_046120_010 Hb_046120_010 Hb_000082_020--Hb_046120_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010 Hb_041025_010--Hb_046120_010 Hb_041025_010--Hb_114079_010 Hb_041025_010--Hb_183522_010 Hb_010964_020 Hb_010964_020 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010 Hb_114079_010--Hb_183522_010 Hb_003030_040 Hb_003030_040 Hb_114079_010--Hb_003030_040 Hb_025905_020 Hb_025905_020 Hb_114079_010--Hb_025905_020 Hb_114079_010--Hb_010964_020 Hb_046120_010--Hb_114079_010 Hb_001252_200 Hb_001252_200 Hb_046120_010--Hb_001252_200 Hb_000084_130 Hb_000084_130 Hb_046120_010--Hb_000084_130 Hb_032258_020 Hb_032258_020 Hb_046120_010--Hb_032258_020 Hb_007083_020--Hb_183522_010 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_183522_010--Hb_106415_010 Hb_183522_010--Hb_010964_020 Hb_000053_030 Hb_000053_030 Hb_183522_010--Hb_000053_030 Hb_005107_020 Hb_005107_020 Hb_183522_010--Hb_005107_020 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0887 23.3405 44.2392 130.7 15.1212 227.285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1827 7.92991 9.62517 24.9279 7.09895

CAGE analysis