Hb_000082_080

Information

Type -
Description -
Location Contig82: 355789-358204
Sequence    

Annotation

kegg
ID rcu:RCOM_0937520
description sugar transporter, putative (EC:1.3.1.74)
nr
ID CAP58706.1
description putative polyol transporter protein 1 [Hevea brasiliensis]
swissprot
ID Q8VZ80
description Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2
trembl
ID B0RZ58
description Polyols transporter 1 OS=Hevea brasiliensis GN=plt1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description polyol transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59557: 355757-358026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000082_080 0.0 - - putative polyol transporter protein 1 [Hevea brasiliensis]
2 Hb_002154_050 0.1419287326 - - RNA binding protein, putative [Ricinus communis]
3 Hb_005167_040 0.1470558144 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
4 Hb_004659_120 0.1522030386 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
5 Hb_005539_290 0.1547466375 - - unknown [Lotus japonicus]
6 Hb_006831_010 0.1558400603 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000184_040 0.1574694112 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
8 Hb_001696_030 0.1616832165 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000130_370 0.161937078 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
10 Hb_001017_090 0.1633607343 - - -
11 Hb_004143_110 0.1676190535 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
12 Hb_010174_120 0.1694205097 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
13 Hb_006070_010 0.1733017508 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
14 Hb_023226_090 0.1738816155 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
15 Hb_001476_100 0.1749674655 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000762_020 0.1759147278 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
17 Hb_006602_020 0.1792614869 - - unknown [Medicago truncatula]
18 Hb_006602_010 0.1792978903 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
19 Hb_023988_020 0.1796076379 - - PREDICTED: transmembrane protein 19 [Prunus mume]
20 Hb_002902_110 0.1850484277 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_000082_080 Hb_000082_080 Hb_002154_050 Hb_002154_050 Hb_000082_080--Hb_002154_050 Hb_005167_040 Hb_005167_040 Hb_000082_080--Hb_005167_040 Hb_004659_120 Hb_004659_120 Hb_000082_080--Hb_004659_120 Hb_005539_290 Hb_005539_290 Hb_000082_080--Hb_005539_290 Hb_006831_010 Hb_006831_010 Hb_000082_080--Hb_006831_010 Hb_000184_040 Hb_000184_040 Hb_000082_080--Hb_000184_040 Hb_005779_100 Hb_005779_100 Hb_002154_050--Hb_005779_100 Hb_002154_050--Hb_005539_290 Hb_006602_010 Hb_006602_010 Hb_002154_050--Hb_006602_010 Hb_006602_020 Hb_006602_020 Hb_002154_050--Hb_006602_020 Hb_001473_130 Hb_001473_130 Hb_002154_050--Hb_001473_130 Hb_000479_330 Hb_000479_330 Hb_002154_050--Hb_000479_330 Hb_001696_030 Hb_001696_030 Hb_005167_040--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_005167_040--Hb_023988_020 Hb_000258_080 Hb_000258_080 Hb_005167_040--Hb_000258_080 Hb_007766_010 Hb_007766_010 Hb_005167_040--Hb_007766_010 Hb_000031_030 Hb_000031_030 Hb_005167_040--Hb_000031_030 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_001902_050 Hb_001902_050 Hb_005539_290--Hb_001902_050 Hb_005539_290--Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_005539_290--Hb_000700_090 Hb_005539_290--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_005539_290--Hb_000671_100 Hb_000345_040 Hb_000345_040 Hb_006831_010--Hb_000345_040 Hb_001017_090 Hb_001017_090 Hb_006831_010--Hb_001017_090 Hb_000442_030 Hb_000442_030 Hb_006831_010--Hb_000442_030 Hb_008695_190 Hb_008695_190 Hb_006831_010--Hb_008695_190 Hb_005245_090 Hb_005245_090 Hb_006831_010--Hb_005245_090 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000184_040--Hb_000762_020 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_000184_040--Hb_023988_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
195.852 14.2402 1.80021 95.1792 88.1363 320.433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
306.403 68.9767 232.728 42.4298 4.78534

CAGE analysis