Hb_000083_010

Information

Type -
Description -
Location Contig83: 23713-25962
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_F08r.ab1: 25352-25962

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_010 0.0 - - -
2 Hb_027751_070 0.0345314105 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
3 Hb_000398_110 0.0462907043 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
4 Hb_000977_260 0.0539586453 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
5 Hb_001210_110 0.0565256553 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
6 Hb_003208_010 0.0588357165 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
7 Hb_020859_010 0.0597566135 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X6 [Populus euphratica]
8 Hb_000003_530 0.060907362 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
9 Hb_002161_010 0.0620279056 - - PREDICTED: 3,9-dihydroxypterocarpan 6A-monooxygenase-like [Jatropha curcas]
10 Hb_004150_020 0.0641911803 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_013818_020 0.0646335106 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
12 Hb_020805_090 0.0659173184 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
13 Hb_000762_050 0.0665609023 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
14 Hb_000282_110 0.0680828412 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
15 Hb_000349_150 0.0708491888 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
16 Hb_003251_010 0.0709240997 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
17 Hb_004855_030 0.0713609615 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_000893_040 0.0723995506 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
19 Hb_004116_030 0.0726660763 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
20 Hb_005656_220 0.0726724176 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]

Gene co-expression network

sample Hb_000083_010 Hb_000083_010 Hb_027751_070 Hb_027751_070 Hb_000083_010--Hb_027751_070 Hb_000398_110 Hb_000398_110 Hb_000083_010--Hb_000398_110 Hb_000977_260 Hb_000977_260 Hb_000083_010--Hb_000977_260 Hb_001210_110 Hb_001210_110 Hb_000083_010--Hb_001210_110 Hb_003208_010 Hb_003208_010 Hb_000083_010--Hb_003208_010 Hb_020859_010 Hb_020859_010 Hb_000083_010--Hb_020859_010 Hb_027751_070--Hb_020859_010 Hb_027751_070--Hb_000398_110 Hb_027751_070--Hb_000977_260 Hb_002040_070 Hb_002040_070 Hb_027751_070--Hb_002040_070 Hb_027751_070--Hb_001210_110 Hb_000398_110--Hb_000977_260 Hb_000398_110--Hb_003208_010 Hb_003251_010 Hb_003251_010 Hb_000398_110--Hb_003251_010 Hb_000282_110 Hb_000282_110 Hb_000398_110--Hb_000282_110 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_000977_260--Hb_000893_040 Hb_008489_030 Hb_008489_030 Hb_000977_260--Hb_008489_030 Hb_000977_260--Hb_020859_010 Hb_001210_110--Hb_002040_070 Hb_006040_090 Hb_006040_090 Hb_001210_110--Hb_006040_090 Hb_005656_220 Hb_005656_220 Hb_001210_110--Hb_005656_220 Hb_006495_030 Hb_006495_030 Hb_001210_110--Hb_006495_030 Hb_003208_010--Hb_003251_010 Hb_003208_010--Hb_000282_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_003208_010--Hb_000893_040 Hb_003053_090 Hb_003053_090 Hb_020859_010--Hb_003053_090 Hb_015981_010 Hb_015981_010 Hb_020859_010--Hb_015981_010 Hb_020859_010--Hb_000893_040 Hb_004150_020 Hb_004150_020 Hb_020859_010--Hb_004150_020 Hb_020859_010--Hb_008489_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.06442 22.8017 5.77871 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.174422 128.331

CAGE analysis