Hb_000083_120

Information

Type -
Description -
Location Contig83: 207226-210364
Sequence    

Annotation

kegg
ID rcu:RCOM_0884580
description transcription factor, putative
nr
ID XP_002522619.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FY69
description Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1
trembl
ID B9S9F0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0884580 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh143-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59779: 207236-211381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_120 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000923_010 0.0612226797 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
3 Hb_005765_010 0.0645165879 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
4 Hb_000111_290 0.0646231751 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
5 Hb_011016_050 0.0647248271 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
6 Hb_004324_130 0.0660640489 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_001500_140 0.0662239471 - - pelota, putative [Ricinus communis]
8 Hb_000028_180 0.0682143361 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_001341_170 0.0693424433 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
10 Hb_000009_560 0.0693575865 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
11 Hb_000890_210 0.0694117794 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
12 Hb_001584_120 0.0699911334 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
13 Hb_000107_490 0.070874945 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_015934_040 0.0709776852 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
15 Hb_001635_090 0.0710699517 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
16 Hb_000173_490 0.0723524294 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
17 Hb_000590_050 0.0726365755 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
18 Hb_000192_080 0.0742343034 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
19 Hb_000703_150 0.0745646966 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
20 Hb_105328_020 0.0747240108 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]

Gene co-expression network

sample Hb_000083_120 Hb_000083_120 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000111_290 Hb_000111_290 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_001500_140 Hb_001500_140 Hb_000083_120--Hb_001500_140 Hb_013399_020 Hb_013399_020 Hb_000923_010--Hb_013399_020 Hb_000029_300 Hb_000029_300 Hb_000923_010--Hb_000029_300 Hb_002026_210 Hb_002026_210 Hb_000923_010--Hb_002026_210 Hb_000260_330 Hb_000260_330 Hb_000923_010--Hb_000260_330 Hb_000340_530 Hb_000340_530 Hb_000923_010--Hb_000340_530 Hb_007062_030 Hb_007062_030 Hb_005765_010--Hb_007062_030 Hb_003363_080 Hb_003363_080 Hb_005765_010--Hb_003363_080 Hb_105328_020 Hb_105328_020 Hb_005765_010--Hb_105328_020 Hb_005765_010--Hb_001500_140 Hb_000981_030 Hb_000981_030 Hb_005765_010--Hb_000981_030 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_011016_050--Hb_000614_240 Hb_000140_210 Hb_000140_210 Hb_011016_050--Hb_000140_210 Hb_009296_040 Hb_009296_040 Hb_011016_050--Hb_009296_040 Hb_004030_080 Hb_004030_080 Hb_011016_050--Hb_004030_080 Hb_010142_020 Hb_010142_020 Hb_011016_050--Hb_010142_020 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_001500_140--Hb_001999_310 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6896 13.5283 9.47966 13.5218 9.96518 16.0219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00143 11.0106 14.5416 15.4672 9.28929

CAGE analysis