Hb_000083_150

Information

Type -
Description -
Location Contig83: 236055-239024
Sequence    

Annotation

kegg
ID rcu:RCOM_0884460
description hypothetical protein
nr
ID XP_012069291.1
description PREDICTED: uncharacterized protein LOC105631732 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S9E8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0884460 PE=4 SV=1
Gene Ontology
ID GO:0016757
description PREDICTED: uncharacterized protein LOC105631732

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59781: 236629-238012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_150 0.0 - - PREDICTED: uncharacterized protein LOC105631732 [Jatropha curcas]
2 Hb_000853_250 0.1632801827 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
3 Hb_003427_030 0.1775432297 - - -
4 Hb_002224_020 0.1812253803 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
5 Hb_000003_610 0.1842921483 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
6 Hb_000093_090 0.1843084311 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
7 Hb_149882_010 0.1849455162 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
8 Hb_006816_240 0.1867531387 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
9 Hb_000185_180 0.1868056038 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
10 Hb_000062_280 0.1874921566 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
11 Hb_004319_010 0.1874956197 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
12 Hb_000017_250 0.1895139201 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
13 Hb_001141_440 0.1917602769 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
14 Hb_085829_010 0.1928208578 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
15 Hb_007477_010 0.1946606164 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
16 Hb_000563_470 0.1961900987 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
17 Hb_004705_060 0.1967812474 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
18 Hb_000207_060 0.1976392364 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
19 Hb_001141_270 0.1989066549 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
20 Hb_001213_060 0.2004626142 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_150 Hb_000083_150 Hb_000853_250 Hb_000853_250 Hb_000083_150--Hb_000853_250 Hb_003427_030 Hb_003427_030 Hb_000083_150--Hb_003427_030 Hb_002224_020 Hb_002224_020 Hb_000083_150--Hb_002224_020 Hb_000003_610 Hb_000003_610 Hb_000083_150--Hb_000003_610 Hb_000093_090 Hb_000093_090 Hb_000083_150--Hb_000093_090 Hb_149882_010 Hb_149882_010 Hb_000083_150--Hb_149882_010 Hb_001141_440 Hb_001141_440 Hb_000853_250--Hb_001141_440 Hb_000062_280 Hb_000062_280 Hb_000853_250--Hb_000062_280 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000162_190 Hb_000162_190 Hb_000853_250--Hb_000162_190 Hb_000017_250 Hb_000017_250 Hb_000853_250--Hb_000017_250 Hb_025787_020 Hb_025787_020 Hb_000853_250--Hb_025787_020 Hb_003427_030--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_000789_160 Hb_000789_160 Hb_003427_030--Hb_000789_160 Hb_002224_020--Hb_149882_010 Hb_002224_020--Hb_087992_010 Hb_002224_020--Hb_000185_180 Hb_001863_330 Hb_001863_330 Hb_002224_020--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_002224_020--Hb_127839_010 Hb_000997_080 Hb_000997_080 Hb_000003_610--Hb_000997_080 Hb_006088_020 Hb_006088_020 Hb_000003_610--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_000003_610--Hb_002918_270 Hb_000984_130 Hb_000984_130 Hb_000003_610--Hb_000984_130 Hb_000261_070 Hb_000261_070 Hb_000003_610--Hb_000261_070 Hb_002902_060 Hb_002902_060 Hb_000003_610--Hb_002902_060 Hb_002292_080 Hb_002292_080 Hb_000093_090--Hb_002292_080 Hb_000093_090--Hb_000162_190 Hb_000093_090--Hb_000853_250 Hb_003935_040 Hb_003935_040 Hb_000093_090--Hb_003935_040 Hb_000093_090--Hb_001141_440 Hb_030685_010 Hb_030685_010 Hb_000093_090--Hb_030685_010 Hb_149882_010--Hb_127839_010 Hb_149882_010--Hb_087992_010 Hb_000563_470 Hb_000563_470 Hb_149882_010--Hb_000563_470 Hb_149882_010--Hb_000185_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.158533 0.38447 0.0244466 0.0129843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0373155 0.049008

CAGE analysis