Hb_000083_170

Information

Type -
Description -
Location Contig83: 246951-247481
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16160g
description POPTRDRAFT_766429; RNA polymerase Rpb7 N-terminal domain-containing family protein
nr
ID XP_011029874.1
description PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
swissprot
ID A6QRA1
description DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1
trembl
ID B9HKE3
description RNA polymerase Rpb7 N-terminal domain-containing family protein OS=Populus trichocarpa GN=POPTR_0008s16160g PE=4 SV=1
Gene Ontology
ID GO:0003899
description dna-directed rna polymerase v subunit 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59785: 242751-247858
cDNA
(Sanger)
(ID:Location)		 009_D20.ab1: 242756-247634 , 013_K09.ab1: 242756-247559

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_170 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
2 Hb_037887_010 0.0554095009 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
3 Hb_005867_020 0.0617968526 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
4 Hb_000162_260 0.0770548448 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
5 Hb_000326_090 0.0772020491 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
6 Hb_012653_040 0.0796195956 - - UV-induced protein uvi31, putative [Ricinus communis]
7 Hb_002259_160 0.0804741655 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
8 Hb_001205_150 0.0816083915 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
9 Hb_000479_190 0.0865446957 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003352_040 0.089578407 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
11 Hb_031089_040 0.0898697114 - - thioredoxin H-type 1 [Hevea brasiliensis]
12 Hb_001268_050 0.0902027065 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
13 Hb_066768_010 0.090755117 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_001584_190 0.0913894454 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
15 Hb_003092_030 0.0959518102 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
16 Hb_001504_080 0.0963229855 - - golgi snare 11 protein, putative [Ricinus communis]
17 Hb_003502_090 0.0965702155 - - ATP synthase subunit d, putative [Ricinus communis]
18 Hb_012675_070 0.0982667518 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
19 Hb_021238_050 0.0995553676 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006429_010 0.0996737559 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_170 Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000326_090 Hb_000326_090 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_000479_190 Hb_000479_190 Hb_005867_020--Hb_000479_190 Hb_003502_090 Hb_003502_090 Hb_005867_020--Hb_003502_090 Hb_005867_020--Hb_000326_090 Hb_000656_170 Hb_000656_170 Hb_005867_020--Hb_000656_170 Hb_002207_110 Hb_002207_110 Hb_005867_020--Hb_002207_110 Hb_000162_260--Hb_001584_190 Hb_000162_260--Hb_037887_010 Hb_000162_260--Hb_012653_040 Hb_066768_010 Hb_066768_010 Hb_000162_260--Hb_066768_010 Hb_000162_260--Hb_000479_190 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_000326_090--Hb_066768_010 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_180301_010 Hb_180301_010 Hb_012653_040--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_012653_040--Hb_001504_080 Hb_012653_040--Hb_006198_080 Hb_012653_040--Hb_037887_010 Hb_002259_160--Hb_037887_010 Hb_003352_040 Hb_003352_040 Hb_002259_160--Hb_003352_040 Hb_012675_070 Hb_012675_070 Hb_002259_160--Hb_012675_070 Hb_002259_160--Hb_000326_090 Hb_041205_010 Hb_041205_010 Hb_002259_160--Hb_041205_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2088 15.2868 23.0765 90.8515 36.292 106.219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.2336 104.121 84.9691 34.0369 30.259

CAGE analysis