Hb_000083_180

Information

Type -
Description -
Location Contig83: 248298-250380
Sequence    

Annotation

kegg
ID rcu:RCOM_0884230
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_012069174.1
description PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
swissprot
ID D4N501
description Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
trembl
ID B9S9D6
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_0884230 PE=3 SV=1
Gene Ontology
ID GO:0045431
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59786: 248230-250697 , PASA_asmbl_59787: 248230-250077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_180 0.0 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
2 Hb_000230_420 0.0594566894 - - GS [Hevea brasiliensis subsp. brasiliensis]
3 Hb_003020_120 0.059759866 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
4 Hb_001006_160 0.0607094337 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000676_320 0.0611394556 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
6 Hb_117807_020 0.0616050729 - - methyltransferase, putative [Ricinus communis]
7 Hb_005276_080 0.0623455224 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
8 Hb_003038_060 0.0673701849 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
9 Hb_002785_040 0.0674189606 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
10 Hb_013405_110 0.0677633351 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_003847_070 0.0690146203 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
12 Hb_002592_040 0.0711059776 - - ACC oxidase 3 [Hevea brasiliensis]
13 Hb_003747_090 0.0730156109 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_020648_030 0.0732712159 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
15 Hb_000450_050 0.0735870032 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
16 Hb_001717_060 0.0756502008 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
17 Hb_005375_090 0.0764720738 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
18 Hb_000948_240 0.0775092088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000531_100 0.0806320163 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
20 Hb_009193_020 0.0833597601 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_180 Hb_000083_180 Hb_000230_420 Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_003020_120 Hb_003020_120 Hb_000083_180--Hb_003020_120 Hb_001006_160 Hb_001006_160 Hb_000083_180--Hb_001006_160 Hb_000676_320 Hb_000676_320 Hb_000083_180--Hb_000676_320 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_005276_080 Hb_005276_080 Hb_000083_180--Hb_005276_080 Hb_001292_030 Hb_001292_030 Hb_000230_420--Hb_001292_030 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_013405_110 Hb_013405_110 Hb_003020_120--Hb_013405_110 Hb_004899_190 Hb_004899_190 Hb_003020_120--Hb_004899_190 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_003847_070 Hb_003847_070 Hb_003020_120--Hb_003847_070 Hb_002592_040 Hb_002592_040 Hb_003020_120--Hb_002592_040 Hb_001006_160--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_001006_160--Hb_006665_020 Hb_002785_040 Hb_002785_040 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_001006_160--Hb_002592_040 Hb_000676_320--Hb_005276_080 Hb_009193_020 Hb_009193_020 Hb_000676_320--Hb_009193_020 Hb_000676_320--Hb_001006_160 Hb_000450_050 Hb_000450_050 Hb_000676_320--Hb_000450_050 Hb_000676_320--Hb_003020_120 Hb_117807_020--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_117807_020--Hb_001766_160 Hb_117807_020--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_117807_020--Hb_000589_340 Hb_117807_020--Hb_000230_420 Hb_005276_080--Hb_006665_020 Hb_005276_080--Hb_000531_100 Hb_005276_080--Hb_000450_050 Hb_005276_080--Hb_000589_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0614089 0.954905 45.5746 13.0476 0.200339 0.528105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0935435 0.122655 0.0460913 0.234999 78.0626

CAGE analysis