Hb_000083_200

Information

Type -
Description -
Location Contig83: 284511-284980
Sequence    

Annotation

kegg
ID rcu:RCOM_0961230
description hypothetical protein
nr
ID XP_002524323.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEA4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0961230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59788: 284518-293644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001349_040 0.0326318187 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
3 Hb_112950_010 0.0664465564 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
4 Hb_009421_060 0.0684000745 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
5 Hb_000497_030 0.0710347904 - - -
6 Hb_006717_060 0.0756367597 - - PREDICTED: peroxidase 42 [Jatropha curcas]
7 Hb_000699_220 0.0795747778 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
8 Hb_006153_140 0.0808489726 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
9 Hb_021596_050 0.0816663121 - - conserved hypothetical protein [Ricinus communis]
10 Hb_071079_040 0.081669655 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
11 Hb_115572_010 0.0855859503 - - PREDICTED: beta-galactosidase 6 [Jatropha curcas]
12 Hb_000866_130 0.08567795 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
13 Hb_009079_020 0.0946525641 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
14 Hb_001500_020 0.0955562869 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003598_050 0.0958790863 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
16 Hb_000336_120 0.0962194757 - - PREDICTED: mavicyanin [Populus euphratica]
17 Hb_006573_120 0.0962211687 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
18 Hb_015175_070 0.0972451057 - - cysteine protease, putative [Ricinus communis]
19 Hb_000310_050 0.0982796792 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_180088_010 0.0982963418 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000083_200 Hb_000083_200 Hb_001349_040 Hb_001349_040 Hb_000083_200--Hb_001349_040 Hb_112950_010 Hb_112950_010 Hb_000083_200--Hb_112950_010 Hb_009421_060 Hb_009421_060 Hb_000083_200--Hb_009421_060 Hb_000497_030 Hb_000497_030 Hb_000083_200--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_000083_200--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_000083_200--Hb_000699_220 Hb_001349_040--Hb_000699_220 Hb_001349_040--Hb_112950_010 Hb_001349_040--Hb_000497_030 Hb_001349_040--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_001349_040--Hb_000310_050 Hb_003598_050 Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_002686_220 Hb_002686_220 Hb_112950_010--Hb_002686_220 Hb_001500_020 Hb_001500_020 Hb_112950_010--Hb_001500_020 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_001579_160 Hb_001579_160 Hb_009421_060--Hb_001579_160 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_009421_060--Hb_180088_010 Hb_009421_060--Hb_001500_020 Hb_001541_170 Hb_001541_170 Hb_009421_060--Hb_001541_170 Hb_000497_030--Hb_000699_220 Hb_000497_030--Hb_006717_060 Hb_003580_020 Hb_003580_020 Hb_000497_030--Hb_003580_020 Hb_071079_040 Hb_071079_040 Hb_000497_030--Hb_071079_040 Hb_006717_060--Hb_000699_220 Hb_006717_060--Hb_003580_020 Hb_012114_090 Hb_012114_090 Hb_006717_060--Hb_012114_090 Hb_000336_120 Hb_000336_120 Hb_006717_060--Hb_000336_120 Hb_000699_220--Hb_012114_090 Hb_000699_220--Hb_000336_120 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.07601 1.96853 14.4321 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.144039 3.48033

CAGE analysis