Hb_000083_280

Information

Type -
Description -
Location Contig83: 322522-322851
Sequence    

Annotation

kegg
ID rcu:RCOM_0883760
description copper ion binding protein, putative
nr
ID XP_002522598.1
description copper ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9C9
description Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_0883760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_280 0.0 - - copper ion binding protein, putative [Ricinus communis]
2 Hb_039812_010 0.0659207958 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_004422_030 0.0881821686 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
4 Hb_000527_030 0.093890344 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
5 Hb_000283_090 0.1057260232 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_113974_010 0.1077018869 - - DNA binding protein, putative [Ricinus communis]
7 Hb_004007_080 0.1098573825 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
8 Hb_005357_140 0.120796637 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
9 Hb_004241_160 0.1219297738 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
10 Hb_103339_010 0.1261250668 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002453_040 0.128937895 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
12 Hb_004459_030 0.130143401 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
13 Hb_000445_320 0.1315915348 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
14 Hb_008226_050 0.1316188966 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
15 Hb_052530_010 0.1325886803 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
16 Hb_158845_010 0.133498804 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
17 Hb_001564_100 0.1348988867 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
18 Hb_000316_070 0.1361239778 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
19 Hb_000160_110 0.1366154812 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
20 Hb_003767_030 0.1368005988 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_280 Hb_000083_280 Hb_039812_010 Hb_039812_010 Hb_000083_280--Hb_039812_010 Hb_004422_030 Hb_004422_030 Hb_000083_280--Hb_004422_030 Hb_000527_030 Hb_000527_030 Hb_000083_280--Hb_000527_030 Hb_000283_090 Hb_000283_090 Hb_000083_280--Hb_000283_090 Hb_113974_010 Hb_113974_010 Hb_000083_280--Hb_113974_010 Hb_004007_080 Hb_004007_080 Hb_000083_280--Hb_004007_080 Hb_039812_010--Hb_004422_030 Hb_001864_040 Hb_001864_040 Hb_039812_010--Hb_001864_040 Hb_000316_070 Hb_000316_070 Hb_039812_010--Hb_000316_070 Hb_004459_030 Hb_004459_030 Hb_039812_010--Hb_004459_030 Hb_033152_060 Hb_033152_060 Hb_039812_010--Hb_033152_060 Hb_002918_220 Hb_002918_220 Hb_004422_030--Hb_002918_220 Hb_004225_160 Hb_004225_160 Hb_004422_030--Hb_004225_160 Hb_001439_240 Hb_001439_240 Hb_004422_030--Hb_001439_240 Hb_010267_020 Hb_010267_020 Hb_004422_030--Hb_010267_020 Hb_000527_030--Hb_004007_080 Hb_002453_040 Hb_002453_040 Hb_000527_030--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000527_030--Hb_052530_010 Hb_074660_010 Hb_074660_010 Hb_000527_030--Hb_074660_010 Hb_004241_160 Hb_004241_160 Hb_000527_030--Hb_004241_160 Hb_005357_140 Hb_005357_140 Hb_000283_090--Hb_005357_140 Hb_001301_310 Hb_001301_310 Hb_000283_090--Hb_001301_310 Hb_000283_090--Hb_004422_030 Hb_000283_090--Hb_000527_030 Hb_004003_020 Hb_004003_020 Hb_000283_090--Hb_004003_020 Hb_003641_040 Hb_003641_040 Hb_113974_010--Hb_003641_040 Hb_000160_110 Hb_000160_110 Hb_113974_010--Hb_000160_110 Hb_113974_010--Hb_004241_160 Hb_008226_050 Hb_008226_050 Hb_113974_010--Hb_008226_050 Hb_113974_010--Hb_000527_030 Hb_006519_020 Hb_006519_020 Hb_004007_080--Hb_006519_020 Hb_004007_080--Hb_052530_010 Hb_000816_080 Hb_000816_080 Hb_004007_080--Hb_000816_080 Hb_088118_010 Hb_088118_010 Hb_004007_080--Hb_088118_010 Hb_103339_010 Hb_103339_010 Hb_004007_080--Hb_103339_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.335232 0.666717 15.1272 4.36112 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106082 1.14149

CAGE analysis