Hb_000084_120

Information

Type -
Description -
Location Contig84: 110478-111947
Sequence    

Annotation

kegg
ID pmum:103341799
description pentatricopeptide repeat-containing protein At2g36240
nr
ID XP_012072961.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
swissprot
ID Q9SJN2
description Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
trembl
ID A0A067KM43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60034: 110604-110876 , PASA_asmbl_60036: 111330-111634 , PASA_asmbl_60037: 111703-111924 , PASA_asmbl_60038: 111933-112614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
2 Hb_016898_010 0.0487645928 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
3 Hb_003362_070 0.0576069123 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
4 Hb_003952_150 0.058562853 - - PREDICTED: cactin [Jatropha curcas]
5 Hb_004602_040 0.0599416437 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
6 Hb_000101_240 0.0624957929 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
7 Hb_003428_070 0.0698223817 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
8 Hb_000271_090 0.0698932646 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000011_230 0.0717354271 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
10 Hb_048476_180 0.073657532 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
11 Hb_004096_100 0.0741445842 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
12 Hb_009175_020 0.0754885392 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
13 Hb_000183_020 0.0758598837 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
14 Hb_000343_120 0.0759817729 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
15 Hb_123352_020 0.0761211525 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
16 Hb_003044_020 0.0775424045 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_001617_060 0.0776716395 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
18 Hb_008159_020 0.0780333606 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
19 Hb_000820_170 0.0784792043 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_001199_100 0.079238978 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]

Gene co-expression network

sample Hb_000084_120 Hb_000084_120 Hb_016898_010 Hb_016898_010 Hb_000084_120--Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_000084_120--Hb_003362_070 Hb_003952_150 Hb_003952_150 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000101_240 Hb_000101_240 Hb_000084_120--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_000084_120--Hb_003428_070 Hb_016898_010--Hb_003362_070 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_016898_010--Hb_003428_070 Hb_016898_010--Hb_003952_150 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003952_150--Hb_003362_070 Hb_010381_060 Hb_010381_060 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200 Hb_001912_100 Hb_001912_100 Hb_004602_040--Hb_001912_100 Hb_000244_220 Hb_000244_220 Hb_004602_040--Hb_000244_220 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_000101_240--Hb_003428_070 Hb_000101_240--Hb_048476_180 Hb_000101_240--Hb_003362_070 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86212 2.72992 1.2255 1.82261 3.69272 5.00797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88594 2.33871 2.26608 3.37367 2.05003

CAGE analysis