Hb_000084_140

Information

Type -
Description -
Location Contig84: 116199-118036
Sequence    

Annotation

kegg
ID rcu:RCOM_0820840
description Aspartic proteinase nepenthesin-2 precursor, putative
nr
ID XP_002525244.1
description Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
swissprot
ID Q9LS40
description Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1
trembl
ID B9SGX5
description Aspartic proteinase nepenthesin-2, putative OS=Ricinus communis GN=RCOM_0820840 PE=3 SV=1
Gene Ontology
ID GO:0004190
description protein aspartic protease in guard cell 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60039: 116005-117899
cDNA
(Sanger)
(ID:Location)		 029_F08.ab1: 116511-117320

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_140 0.0 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
2 Hb_020400_020 0.1177896381 - - starch synthase isoform II [Manihot esculenta]
3 Hb_007933_030 0.1300819716 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
4 Hb_004109_130 0.1338994788 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
5 Hb_065525_070 0.140400251 - - unnamed protein product [Homo sapiens]
6 Hb_000538_300 0.1433425173 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
7 Hb_000976_130 0.1498041329 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
8 Hb_002010_110 0.1606159441 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
9 Hb_004712_200 0.1617381645 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
10 Hb_001793_030 0.1676036126 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
11 Hb_001195_370 0.1689366261 - - -
12 Hb_008616_040 0.1699503904 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
13 Hb_003786_010 0.1700024954 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
14 Hb_000208_270 0.1700143992 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
15 Hb_000359_160 0.1720459335 - - PREDICTED: protein CAJ1 [Jatropha curcas]
16 Hb_010174_100 0.1723601751 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
17 Hb_000966_040 0.1750387501 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
18 Hb_000574_330 0.1755437112 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
19 Hb_000237_160 0.1762894733 - - BEL1-like homeodomain protein 1 [Morus notabilis]
20 Hb_006940_020 0.1767885185 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_000084_140 Hb_000084_140 Hb_020400_020 Hb_020400_020 Hb_000084_140--Hb_020400_020 Hb_007933_030 Hb_007933_030 Hb_000084_140--Hb_007933_030 Hb_004109_130 Hb_004109_130 Hb_000084_140--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_000084_140--Hb_065525_070 Hb_000538_300 Hb_000538_300 Hb_000084_140--Hb_000538_300 Hb_000976_130 Hb_000976_130 Hb_000084_140--Hb_000976_130 Hb_020400_020--Hb_000538_300 Hb_020400_020--Hb_004109_130 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_001579_150 Hb_001579_150 Hb_020400_020--Hb_001579_150 Hb_000521_090 Hb_000521_090 Hb_007933_030--Hb_000521_090 Hb_001195_370 Hb_001195_370 Hb_007933_030--Hb_001195_370 Hb_001080_150 Hb_001080_150 Hb_007933_030--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_007933_030--Hb_001793_030 Hb_000300_680 Hb_000300_680 Hb_007933_030--Hb_000300_680 Hb_007933_030--Hb_020400_020 Hb_005332_150 Hb_005332_150 Hb_004109_130--Hb_005332_150 Hb_000966_040 Hb_000966_040 Hb_004109_130--Hb_000966_040 Hb_004109_130--Hb_065525_070 Hb_000208_270 Hb_000208_270 Hb_004109_130--Hb_000208_270 Hb_001109_160 Hb_001109_160 Hb_065525_070--Hb_001109_160 Hb_065525_070--Hb_000976_130 Hb_003029_140 Hb_003029_140 Hb_065525_070--Hb_003029_140 Hb_008616_040 Hb_008616_040 Hb_065525_070--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_065525_070--Hb_001250_020 Hb_000538_300--Hb_000208_270 Hb_003688_140 Hb_003688_140 Hb_000538_300--Hb_003688_140 Hb_000787_210 Hb_000787_210 Hb_000538_300--Hb_000787_210 Hb_000538_300--Hb_001969_130 Hb_000976_130--Hb_008616_040 Hb_001053_020 Hb_001053_020 Hb_000976_130--Hb_001053_020 Hb_000005_100 Hb_000005_100 Hb_000976_130--Hb_000005_100 Hb_000976_130--Hb_001250_020 Hb_004242_170 Hb_004242_170 Hb_000976_130--Hb_004242_170 Hb_012799_190 Hb_012799_190 Hb_000976_130--Hb_012799_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.5617 290.059 187.226 298.152 64.2112 21.8908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.5436 23.9693 16.9708 116.138 1056.95

CAGE analysis