Hb_000084_170

Information

Type -
Description -
Location Contig84: 140642-141109
Sequence    

Annotation

kegg
ID rcu:RCOM_0517290
description hypothetical protein
nr
ID XP_002528756.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NLC8
description Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1
trembl
ID B9SRY7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0517290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000685_090 0.2633124544 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_054865_080 0.2678445223 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
4 Hb_000049_240 0.2814592068 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
5 Hb_022793_010 0.29406448 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
6 Hb_187024_090 0.305967412 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_026687_030 0.3123931521 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
8 Hb_007425_020 0.3135683042 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
9 Hb_000868_100 0.319083083 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
10 Hb_004460_050 0.3195932432 - - chaperone protein DNAj, putative [Ricinus communis]
11 Hb_171693_010 0.3214601471 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
12 Hb_002311_170 0.3229059885 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
13 Hb_009813_080 0.3255536709 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
14 Hb_000671_170 0.332443582 - - kinase, putative [Ricinus communis]
15 Hb_012239_010 0.3380036858 - - -
16 Hb_011077_020 0.3392495055 - - kinase, putative [Ricinus communis]
17 Hb_004965_060 0.344230225 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
18 Hb_000175_020 0.3469744348 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000395_210 0.3500093231 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
20 Hb_003687_220 0.3522646552 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]

Gene co-expression network

sample Hb_000084_170 Hb_000084_170 Hb_000685_090 Hb_000685_090 Hb_000084_170--Hb_000685_090 Hb_054865_080 Hb_054865_080 Hb_000084_170--Hb_054865_080 Hb_000049_240 Hb_000049_240 Hb_000084_170--Hb_000049_240 Hb_022793_010 Hb_022793_010 Hb_000084_170--Hb_022793_010 Hb_187024_090 Hb_187024_090 Hb_000084_170--Hb_187024_090 Hb_026687_030 Hb_026687_030 Hb_000084_170--Hb_026687_030 Hb_000685_090--Hb_022793_010 Hb_000965_010 Hb_000965_010 Hb_000685_090--Hb_000965_010 Hb_000495_060 Hb_000495_060 Hb_000685_090--Hb_000495_060 Hb_000685_090--Hb_187024_090 Hb_000395_210 Hb_000395_210 Hb_000685_090--Hb_000395_210 Hb_005048_060 Hb_005048_060 Hb_054865_080--Hb_005048_060 Hb_008890_030 Hb_008890_030 Hb_054865_080--Hb_008890_030 Hb_016859_010 Hb_016859_010 Hb_054865_080--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_054865_080--Hb_187136_010 Hb_054865_080--Hb_000049_240 Hb_000868_100 Hb_000868_100 Hb_000049_240--Hb_000868_100 Hb_002675_200 Hb_002675_200 Hb_000049_240--Hb_002675_200 Hb_007425_020 Hb_007425_020 Hb_000049_240--Hb_007425_020 Hb_000671_170 Hb_000671_170 Hb_000049_240--Hb_000671_170 Hb_003687_030 Hb_003687_030 Hb_000049_240--Hb_003687_030 Hb_000694_060 Hb_000694_060 Hb_000049_240--Hb_000694_060 Hb_022793_010--Hb_000965_010 Hb_022793_010--Hb_000495_060 Hb_022793_010--Hb_187024_090 Hb_003645_050 Hb_003645_050 Hb_022793_010--Hb_003645_050 Hb_187024_090--Hb_000965_010 Hb_008008_020 Hb_008008_020 Hb_187024_090--Hb_008008_020 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_015220_010 Hb_015220_010 Hb_026687_030--Hb_015220_010 Hb_003960_020 Hb_003960_020 Hb_026687_030--Hb_003960_020 Hb_007254_030 Hb_007254_030 Hb_026687_030--Hb_007254_030 Hb_001401_100 Hb_001401_100 Hb_026687_030--Hb_001401_100 Hb_000787_040 Hb_000787_040 Hb_026687_030--Hb_000787_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.73362 0.155016 0.542865 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299908 7.1853 0 3.5498 2.81817

CAGE analysis