Hb_000084_220

Information

Type -
Description -
Location Contig84: 188795-189652
Sequence    

Annotation

kegg
ID rcu:RCOM_0517320
description hypothetical protein
nr
ID XP_012072971.1
description PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06758 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_220 0.0 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
2 Hb_128589_010 0.1267421363 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
3 Hb_002471_140 0.1414997565 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
4 Hb_000205_250 0.1485565862 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
5 Hb_000805_190 0.1494090005 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
6 Hb_009646_010 0.154511638 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
7 Hb_000009_140 0.1552495923 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
8 Hb_001959_120 0.1571871509 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
9 Hb_000699_230 0.1574254718 - - Ankyrin repeat family protein, putative [Theobroma cacao]
10 Hb_000110_300 0.1583992888 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
11 Hb_000345_340 0.1586134121 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
12 Hb_004586_240 0.1604815733 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
13 Hb_005504_030 0.1623678646 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
14 Hb_001486_200 0.1623760209 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
15 Hb_000840_070 0.1631739713 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_008667_060 0.1636027648 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
17 Hb_000465_260 0.163825474 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
18 Hb_003607_060 0.1650666095 - - PREDICTED: alcohol dehydrogenase-like [Jatropha curcas]
19 Hb_001341_200 0.1660090586 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
20 Hb_007676_020 0.1661068068 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000084_220 Hb_000084_220 Hb_128589_010 Hb_128589_010 Hb_000084_220--Hb_128589_010 Hb_002471_140 Hb_002471_140 Hb_000084_220--Hb_002471_140 Hb_000205_250 Hb_000205_250 Hb_000084_220--Hb_000205_250 Hb_000805_190 Hb_000805_190 Hb_000084_220--Hb_000805_190 Hb_009646_010 Hb_009646_010 Hb_000084_220--Hb_009646_010 Hb_000009_140 Hb_000009_140 Hb_000084_220--Hb_000009_140 Hb_001956_060 Hb_001956_060 Hb_128589_010--Hb_001956_060 Hb_000110_300 Hb_000110_300 Hb_128589_010--Hb_000110_300 Hb_128589_010--Hb_000205_250 Hb_128589_010--Hb_009646_010 Hb_000345_320 Hb_000345_320 Hb_128589_010--Hb_000345_320 Hb_000625_090 Hb_000625_090 Hb_128589_010--Hb_000625_090 Hb_000345_340 Hb_000345_340 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_002471_140--Hb_000059_130 Hb_000866_090 Hb_000866_090 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_002235_310 Hb_002235_310 Hb_000205_250--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000205_250--Hb_000866_110 Hb_000271_120 Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_000205_250--Hb_011925_020 Hb_000125_180 Hb_000125_180 Hb_000205_250--Hb_000125_180 Hb_000205_250--Hb_001956_060 Hb_000056_280 Hb_000056_280 Hb_000805_190--Hb_000056_280 Hb_000805_190--Hb_000059_130 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_000805_190--Hb_002235_310 Hb_000805_190--Hb_000110_300 Hb_033363_010 Hb_033363_010 Hb_000805_190--Hb_033363_010 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_009646_010--Hb_000056_280 Hb_005504_030 Hb_005504_030 Hb_000009_140--Hb_005504_030 Hb_004586_240 Hb_004586_240 Hb_000009_140--Hb_004586_240 Hb_000009_140--Hb_033363_010 Hb_000009_140--Hb_000072_020 Hb_000009_140--Hb_009646_010 Hb_010068_070 Hb_010068_070 Hb_000009_140--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88519 38.2457 15.506 19.2738 0.477186 2.89245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66389 7.79432 8.63452 34.0179 10.0762

CAGE analysis