Hb_000084_290

Information

Type -
Description -
Location Contig84: 247320-248441
Sequence    

Annotation

kegg
ID rcu:RCOM_0855750
description hypothetical protein
nr
ID ADR70862.1
description mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I6LNS8
description Mitochondrial 39S ribosomal protein L53 OS=Hevea brasiliensis GN=mRPL53 PE=2 SV=1
Gene Ontology
ID GO:0005840
description mitochondrial 39s ribosomal protein l53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60061: 247355-248445
cDNA
(Sanger)
(ID:Location)		 035_K12.ab1: 247355-248275 , 037_D18.ab1: 247355-248273 , 051_K21.ab1: 247367-248261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_290 0.0 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
2 Hb_000742_140 0.0772672786 - - conserved hypothetical protein [Ricinus communis]
3 Hb_025236_040 0.0876001547 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009767_120 0.0882595973 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
5 Hb_011828_050 0.0888590359 - - 40S ribosomal protein S23, putative [Ricinus communis]
6 Hb_000349_060 0.0902980466 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_002983_010 0.0906531438 - - F-box family protein [Populus trichocarpa]
8 Hb_001951_260 0.0906996735 - - 60S ribosomal protein L32, putative [Ricinus communis]
9 Hb_003746_040 0.0932555109 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
10 Hb_002498_180 0.0941185265 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
11 Hb_000457_110 0.0956812217 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
12 Hb_000714_030 0.0968747656 - - Nucleosome assembly [Gossypium arboreum]
13 Hb_005489_130 0.0970683917 - - calmodulin, putative [Ricinus communis]
14 Hb_000465_040 0.0980451248 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
15 Hb_003376_320 0.098304933 - - 60S ribosomal protein L12A [Hevea brasiliensis]
16 Hb_000780_060 0.0998393359 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
17 Hb_001369_650 0.1000213718 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
18 Hb_011537_010 0.1019388555 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
19 Hb_007441_210 0.1021688682 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
20 Hb_004440_050 0.1033270849 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]

Gene co-expression network

sample Hb_000084_290 Hb_000084_290 Hb_000742_140 Hb_000742_140 Hb_000084_290--Hb_000742_140 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_009767_120 Hb_009767_120 Hb_000084_290--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000084_290--Hb_011828_050 Hb_000349_060 Hb_000349_060 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010 Hb_000714_030 Hb_000714_030 Hb_000742_140--Hb_000714_030 Hb_000933_180 Hb_000933_180 Hb_000742_140--Hb_000933_180 Hb_000742_140--Hb_009767_120 Hb_000742_140--Hb_011828_050 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140 Hb_001951_260 Hb_001951_260 Hb_025236_040--Hb_001951_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_000290_020 Hb_000290_020 Hb_025236_040--Hb_000290_020 Hb_009767_120--Hb_000933_180 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_043302_010 Hb_043302_010 Hb_011828_050--Hb_043302_010 Hb_011828_050--Hb_003746_040 Hb_004944_010 Hb_004944_010 Hb_011828_050--Hb_004944_010 Hb_011828_050--Hb_003874_020 Hb_000349_060--Hb_004944_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_002983_010--Hb_000780_060 Hb_003687_110 Hb_003687_110 Hb_002983_010--Hb_003687_110 Hb_002983_010--Hb_000349_060 Hb_003939_080 Hb_003939_080 Hb_002983_010--Hb_003939_080 Hb_001369_660 Hb_001369_660 Hb_002983_010--Hb_001369_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5017 16.9552 17.6159 16.6989 43.8204 50.7543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3426 58.5242 15.2793 6.7942 3.98432

CAGE analysis