Hb_000085_050

Information

Type -
Description -
Location Contig85: 34629-38537
Sequence    

Annotation

kegg
ID rcu:RCOM_0546720
description Protein grpE, putative (EC:5.1.3.1)
nr
ID XP_012070907.1
description PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID B3Q970
description Protein GrpE OS=Rhodopseudomonas palustris (strain TIE-1) GN=grpE PE=3 SV=1
trembl
ID A0A067L547
description GrpE protein homolog OS=Jatropha curcas GN=JCGZ_00951 PE=3 SV=1
Gene Ontology
ID GO:0000774
description grpe protein mitochondrial-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60321: 34766-38143 , PASA_asmbl_60322: 34928-38517 , PASA_asmbl_60323: 34928-38517 , PASA_asmbl_60324: 34770-38143 , PASA_asmbl_60325: 34928-38344 , PASA_asmbl_60326: 34928-38344 , PASA_asmbl_60327: 35900-36274
cDNA
(Sanger)
(ID:Location)		 051_K19.ab1: 34770-36967

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_050 0.0 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_002183_090 0.0566703355 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
3 Hb_005618_170 0.0594131758 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
4 Hb_058999_020 0.0616960103 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
5 Hb_000976_170 0.0629123294 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
6 Hb_108350_010 0.0653505458 - - GTP-binding protein erg, putative [Ricinus communis]
7 Hb_000107_330 0.0668557504 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
8 Hb_002044_080 0.0680613109 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
9 Hb_003525_010 0.0696356503 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
10 Hb_018838_030 0.0697568666 - - conserved hypothetical protein [Ricinus communis]
11 Hb_044728_010 0.072232892 - - -
12 Hb_000092_170 0.0753709473 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
13 Hb_000757_060 0.0756884988 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
14 Hb_008221_140 0.076716895 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
15 Hb_001766_110 0.0767526855 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
16 Hb_000504_140 0.0781378394 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
17 Hb_001242_060 0.0788353204 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
18 Hb_006400_030 0.0789032197 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
19 Hb_001226_160 0.0792651353 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
20 Hb_000251_130 0.0793743126 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_050 Hb_000085_050 Hb_002183_090 Hb_002183_090 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330 Hb_002183_090--Hb_000976_170 Hb_000384_100 Hb_000384_100 Hb_002183_090--Hb_000384_100 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_005305_080 Hb_005305_080 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000757_060 Hb_000757_060 Hb_058999_020--Hb_000757_060 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_000215_110 Hb_000215_110 Hb_058999_020--Hb_000215_110 Hb_000465_460 Hb_000465_460 Hb_058999_020--Hb_000465_460 Hb_058999_020--Hb_002044_080 Hb_000120_460 Hb_000120_460 Hb_000976_170--Hb_000120_460 Hb_000976_170--Hb_108350_010 Hb_025240_040 Hb_025240_040 Hb_000976_170--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_000976_170--Hb_127552_030 Hb_108350_010--Hb_000120_460 Hb_108350_010--Hb_002183_090 Hb_108350_010--Hb_058999_020 Hb_000092_170 Hb_000092_170 Hb_108350_010--Hb_000092_170 Hb_044728_010 Hb_044728_010 Hb_000107_330--Hb_044728_010 Hb_000107_330--Hb_000092_170 Hb_009767_110 Hb_009767_110 Hb_000107_330--Hb_009767_110 Hb_003525_010 Hb_003525_010 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.3213 25.5729 18.3712 21.7879 42.6494 46.2745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.882 67.0066 48.7777 42.9992 27.8072

CAGE analysis