Hb_000085_060

Information

Type -
Description -
Location Contig85: 40677-43080
Sequence    

Annotation

kegg
ID rcu:RCOM_0546730
description hypothetical protein
nr
ID XP_012070909.1
description PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00952 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60328: 40698-43103
cDNA
(Sanger)
(ID:Location)		 022_P16.ab1: 40895-43101

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_060 0.0 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
2 Hb_001124_120 0.0692201655 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
3 Hb_076787_010 0.0722137386 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
4 Hb_031939_010 0.0755858934 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
5 Hb_001014_010 0.0764023065 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
6 Hb_003406_010 0.0779285567 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
7 Hb_007218_080 0.0810627819 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
8 Hb_000599_110 0.0819424326 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000803_300 0.0842559614 - - nuclear movement protein nudc, putative [Ricinus communis]
10 Hb_000645_050 0.0843646816 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
11 Hb_005829_010 0.0869854567 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
12 Hb_000922_330 0.0871278747 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
13 Hb_002527_030 0.0879069355 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
14 Hb_014720_160 0.0887124863 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
15 Hb_004195_280 0.0897956493 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
16 Hb_000905_190 0.0909081786 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
17 Hb_000699_130 0.0916850661 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000943_070 0.0917891565 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
19 Hb_171900_100 0.0918771443 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
20 Hb_003453_020 0.0924302725 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000085_060 Hb_000085_060 Hb_001124_120 Hb_001124_120 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_001124_120--Hb_150360_030 Hb_002349_040 Hb_002349_040 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_001124_120--Hb_031939_010 Hb_001124_120--Hb_007218_080 Hb_005063_040 Hb_005063_040 Hb_076787_010--Hb_005063_040 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_000179_170 Hb_000179_170 Hb_076787_010--Hb_000179_170 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_012305_070 Hb_012305_070 Hb_001014_010--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_001014_010--Hb_000803_300 Hb_001014_010--Hb_000699_130 Hb_001014_010--Hb_008887_050 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_007218_080--Hb_150360_030 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
129.98 36.0667 44.1632 33.6757 143.47 127.046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.694 88.0946 63.5418 37.218 51.8593

CAGE analysis