Hb_000085_130

Information

Type -
Description -
Location Contig85: 89905-90385
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60335: 89740-95491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_130 0.0 - - -
2 Hb_001712_080 0.22992387 - - -
3 Hb_000981_040 0.234255554 - - -
4 Hb_013394_100 0.2556763633 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
5 Hb_073799_010 0.2596517728 - - conserved hypothetical protein [Ricinus communis]
6 Hb_095192_010 0.2649136888 - - hypothetical protein VITISV_043980 [Vitis vinifera]
7 Hb_005928_070 0.2653109425 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
8 Hb_002918_190 0.2658234768 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
9 Hb_000034_090 0.2672026726 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
10 Hb_099298_010 0.2678486093 - - -
11 Hb_183522_010 0.271237912 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_003602_010 0.2741419202 - - serine hydroxymethyltransferase, partial [Populus alba]
13 Hb_010367_020 0.2768339562 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
14 Hb_059978_010 0.2810846431 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_006162_020 0.2823762301 - - -
16 Hb_022614_010 0.2841944338 - - -
17 Hb_000789_150 0.2845115046 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
18 Hb_002079_040 0.2846268292 - - hypothetical protein VITISV_018542 [Vitis vinifera]
19 Hb_002016_030 0.2875912617 - - conserved hypothetical protein [Ricinus communis]
20 Hb_179812_010 0.2893407283 - - TdcA1-ORF1-ORF2 [Daucus carota]

Gene co-expression network

sample Hb_000085_130 Hb_000085_130 Hb_001712_080 Hb_001712_080 Hb_000085_130--Hb_001712_080 Hb_000981_040 Hb_000981_040 Hb_000085_130--Hb_000981_040 Hb_013394_100 Hb_013394_100 Hb_000085_130--Hb_013394_100 Hb_073799_010 Hb_073799_010 Hb_000085_130--Hb_073799_010 Hb_095192_010 Hb_095192_010 Hb_000085_130--Hb_095192_010 Hb_005928_070 Hb_005928_070 Hb_000085_130--Hb_005928_070 Hb_001712_080--Hb_005928_070 Hb_002918_190 Hb_002918_190 Hb_001712_080--Hb_002918_190 Hb_059978_010 Hb_059978_010 Hb_001712_080--Hb_059978_010 Hb_006995_010 Hb_006995_010 Hb_001712_080--Hb_006995_010 Hb_005542_090 Hb_005542_090 Hb_001712_080--Hb_005542_090 Hb_007083_020 Hb_007083_020 Hb_001712_080--Hb_007083_020 Hb_000981_040--Hb_095192_010 Hb_000317_140 Hb_000317_140 Hb_000981_040--Hb_000317_140 Hb_003695_010 Hb_003695_010 Hb_000981_040--Hb_003695_010 Hb_007763_050 Hb_007763_050 Hb_000981_040--Hb_007763_050 Hb_002168_010 Hb_002168_010 Hb_000981_040--Hb_002168_010 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_108227_010 Hb_108227_010 Hb_013394_100--Hb_108227_010 Hb_002388_010 Hb_002388_010 Hb_073799_010--Hb_002388_010 Hb_073799_010--Hb_182713_020 Hb_011942_010 Hb_011942_010 Hb_073799_010--Hb_011942_010 Hb_128473_010 Hb_128473_010 Hb_073799_010--Hb_128473_010 Hb_073799_010--Hb_013394_100 Hb_011287_040 Hb_011287_040 Hb_073799_010--Hb_011287_040 Hb_095192_010--Hb_002168_010 Hb_095192_010--Hb_000317_140 Hb_179812_010 Hb_179812_010 Hb_095192_010--Hb_179812_010 Hb_000015_070 Hb_000015_070 Hb_095192_010--Hb_000015_070 Hb_095192_010--Hb_013394_100 Hb_005928_070--Hb_059978_010 Hb_002379_040 Hb_002379_040 Hb_005928_070--Hb_002379_040 Hb_005928_070--Hb_006995_010 Hb_000289_080 Hb_000289_080 Hb_005928_070--Hb_000289_080 Hb_120052_010 Hb_120052_010 Hb_005928_070--Hb_120052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 25.4104 77.9555 2.47583 55.2375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9361 10.5686 0 4.5187 0

CAGE analysis