Hb_000085_140

Information

Type transcription factor
Description TF Family: PHD
Location Contig85: 95380-99870
Sequence    

Annotation

kegg
ID rcu:RCOM_0546900
description hypothetical protein
nr
ID XP_012070920.1
description PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
swissprot
ID Q5PNS0
description PHD finger protein At3g20280 OS=Arabidopsis thaliana GN=At3g20280 PE=2 SV=1
trembl
ID A0A067KSW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00959 PE=4 SV=1
Gene Ontology
ID GO:0005515
description phd finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60335: 89740-95491 , PASA_asmbl_60337: 95800-96487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_140 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
2 Hb_002615_120 0.0790003126 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
3 Hb_032202_080 0.0792166908 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
4 Hb_065525_130 0.0805394663 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_001377_110 0.0821781988 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
6 Hb_005895_010 0.0830199115 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
7 Hb_098209_010 0.0851574843 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
8 Hb_031284_010 0.0855605412 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
9 Hb_000457_230 0.0857547152 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
10 Hb_000120_210 0.0860682142 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
11 Hb_006570_010 0.087233949 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002304_060 0.0879338927 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
13 Hb_000362_170 0.0892265302 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
14 Hb_001158_160 0.0896366784 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
15 Hb_005053_010 0.0911726229 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
16 Hb_138435_010 0.0917667204 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
17 Hb_003186_020 0.0920142562 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
18 Hb_003104_040 0.0945731286 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
19 Hb_001619_050 0.0949636979 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
20 Hb_021943_080 0.0953153739 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_140 Hb_000085_140 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_032202_080 Hb_032202_080 Hb_000085_140--Hb_032202_080 Hb_065525_130 Hb_065525_130 Hb_000085_140--Hb_065525_130 Hb_001377_110 Hb_001377_110 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_098209_010 Hb_098209_010 Hb_000085_140--Hb_098209_010 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_008568_020 Hb_008568_020 Hb_002615_120--Hb_008568_020 Hb_002615_120--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_032202_080--Hb_000457_230 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_032202_080--Hb_008568_020 Hb_032202_080--Hb_001405_190 Hb_012098_150 Hb_012098_150 Hb_065525_130--Hb_012098_150 Hb_002870_020 Hb_002870_020 Hb_065525_130--Hb_002870_020 Hb_001105_050 Hb_001105_050 Hb_065525_130--Hb_001105_050 Hb_001619_050 Hb_001619_050 Hb_065525_130--Hb_001619_050 Hb_008206_060 Hb_008206_060 Hb_065525_130--Hb_008206_060 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_001021_220 Hb_001021_220 Hb_001377_110--Hb_001021_220 Hb_000362_170 Hb_000362_170 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_098209_010--Hb_005895_010 Hb_098209_010--Hb_002014_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29953 1.29722 2.49077 1.19182 1.66427 1.89419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.863983 0.666793 0.449156 0.918595 1.78085

CAGE analysis