Hb_000085_160

Information

Type -
Description -
Location Contig85: 113566-120038
Sequence    

Annotation

kegg
ID cit:102608319
description serine/threonine-protein phosphatase PP-X isozyme 2-like
nr
ID XP_006452472.1
description hypothetical protein CICLE_v10009012mg [Citrus clementina]
swissprot
ID P48528
description Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2
trembl
ID V4UHY6
description Serine/threonine-protein phosphatase OS=Citrus clementina GN=CICLE_v10009012mg PE=3 SV=1
Gene Ontology
ID GO:0016787
description serine threonine-protein phosphatase pp-x isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60345: 106591-113820 , PASA_asmbl_60348: 113968-120015 , PASA_asmbl_60349: 114400-114647 , PASA_asmbl_60350: 120719-125403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_160 0.0 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
2 Hb_007317_110 0.0498228428 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
3 Hb_003525_010 0.0557178059 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
4 Hb_000011_200 0.0569171596 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
5 Hb_000630_050 0.0602879972 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003665_060 0.0610893879 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
7 Hb_000010_330 0.0614288348 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
8 Hb_000023_220 0.061603333 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
9 Hb_006827_020 0.0628121053 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002477_280 0.0629634172 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
11 Hb_000225_040 0.06366321 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
12 Hb_003952_070 0.0637147142 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_007691_030 0.0648009351 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
14 Hb_003417_020 0.0656349797 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
15 Hb_002716_130 0.065815554 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
16 Hb_019280_040 0.0659641022 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000808_280 0.0664939908 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001638_170 0.0668111585 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
19 Hb_002200_080 0.0682804506 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
20 Hb_007059_010 0.0684965404 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_160 Hb_000085_160 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_003525_010 Hb_003525_010 Hb_000085_160--Hb_003525_010 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_006827_020 Hb_006827_020 Hb_007317_110--Hb_006827_020 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_000011_200--Hb_006827_020 Hb_000011_200--Hb_007317_110 Hb_000808_280 Hb_000808_280 Hb_000630_050--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_000630_050--Hb_106724_020 Hb_000630_050--Hb_006827_020 Hb_000630_050--Hb_007317_110 Hb_000630_050--Hb_000011_200 Hb_003665_060--Hb_000010_330 Hb_003665_060--Hb_003964_070 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6016 7.26264 5.32639 9.10386 13.2404 15.4481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2479 12.7541 9.84126 9.54541 6.28352

CAGE analysis