Hb_000085_170

Information

Type -
Description -
Location Contig85: 120708-126065
Sequence    

Annotation

kegg
ID pxb:103951428
description transcription initiation factor TFIID subunit 6-like
nr
ID XP_012070930.1
description PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
swissprot
ID Q9MAU3
description Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1
trembl
ID A0A067KSX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00964 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 6-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60350: 120719-125403 , PASA_asmbl_60351: 121745-122004 , PASA_asmbl_60352: 124312-125834 , PASA_asmbl_60353: 125960-126082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_170 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
2 Hb_000510_360 0.0504923873 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
3 Hb_000702_090 0.0573949391 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
4 Hb_000321_140 0.0595136938 - - RNA-binding protein, putative [Ricinus communis]
5 Hb_012506_030 0.0604924675 - - AP-2 complex subunit alpha, putative [Ricinus communis]
6 Hb_033312_040 0.0608142626 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
7 Hb_002326_110 0.0620214441 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
8 Hb_004109_320 0.0675402639 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
9 Hb_002326_040 0.0700721886 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
10 Hb_003758_010 0.0703226648 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
11 Hb_103747_020 0.0718978021 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
12 Hb_006189_020 0.0721015494 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_000089_210 0.0721019191 - - unknown [Medicago truncatula]
14 Hb_000476_060 0.0724008017 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000610_040 0.072577097 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
16 Hb_007894_150 0.0727920714 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
17 Hb_000684_510 0.0729244388 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
18 Hb_002909_040 0.073617141 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
19 Hb_000513_090 0.0739231833 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_004586_060 0.0742456615 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_000085_170 Hb_000085_170 Hb_000510_360 Hb_000510_360 Hb_000085_170--Hb_000510_360 Hb_000702_090 Hb_000702_090 Hb_000085_170--Hb_000702_090 Hb_000321_140 Hb_000321_140 Hb_000085_170--Hb_000321_140 Hb_012506_030 Hb_012506_030 Hb_000085_170--Hb_012506_030 Hb_033312_040 Hb_033312_040 Hb_000085_170--Hb_033312_040 Hb_002326_110 Hb_002326_110 Hb_000085_170--Hb_002326_110 Hb_000510_360--Hb_033312_040 Hb_003758_010 Hb_003758_010 Hb_000510_360--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_000510_360--Hb_006189_020 Hb_000510_360--Hb_000321_140 Hb_001817_170 Hb_001817_170 Hb_000510_360--Hb_001817_170 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_002055_020 Hb_002055_020 Hb_000321_140--Hb_002055_020 Hb_001009_280 Hb_001009_280 Hb_000321_140--Hb_001009_280 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_002326_040 Hb_002326_040 Hb_012506_030--Hb_002326_040 Hb_000441_220 Hb_000441_220 Hb_012506_030--Hb_000441_220 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_002811_270 Hb_002811_270 Hb_012506_030--Hb_002811_270 Hb_033312_040--Hb_006189_020 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_000139_080 Hb_000139_080 Hb_033312_040--Hb_000139_080 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070 Hb_005649_100 Hb_005649_100 Hb_002326_110--Hb_005649_100 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080 Hb_002909_040 Hb_002909_040 Hb_002326_110--Hb_002909_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4554 12.6033 18.4985 11.9542 9.32928 8.43799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.03467 6.29477 7.81716 11.6888 10.4691

CAGE analysis