Hb_000085_180

Information

Type -
Description -
Location Contig85: 128092-131214
Sequence    

Annotation

kegg
ID cic:CICLE_v10009364mg
description hypothetical protein
nr
ID XP_012070925.1
description PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
swissprot
ID Q94KK7
description Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1
trembl
ID A0A067KSP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00963 PE=4 SV=1
Gene Ontology
ID GO:0016020
description syntaxin-52-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60354: 127680-130440 , PASA_asmbl_60355: 132184-135718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_180 0.0 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
2 Hb_001454_400 0.0774444785 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
3 Hb_003683_050 0.0802529985 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
4 Hb_000618_040 0.0845986852 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
5 Hb_033843_010 0.0857466852 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
6 Hb_004310_020 0.0883366201 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
7 Hb_000092_100 0.0889562886 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
8 Hb_007594_030 0.0893095411 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
9 Hb_003893_030 0.0919282947 - - Protein yrdA, putative [Ricinus communis]
10 Hb_000307_140 0.091954619 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
11 Hb_000465_430 0.0931644453 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
12 Hb_001481_170 0.0951743459 - - conserved hypothetical protein [Ricinus communis]
13 Hb_025645_010 0.09777193 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
14 Hb_003030_070 0.0981183035 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
15 Hb_011970_030 0.0981259686 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
16 Hb_001936_080 0.0987629642 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
17 Hb_000451_010 0.0994428806 - - secretory carrier membrane protein, putative [Ricinus communis]
18 Hb_005357_080 0.1009809983 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
19 Hb_032920_060 0.1013624921 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
20 Hb_000521_320 0.101462695 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]

Gene co-expression network

sample Hb_000085_180 Hb_000085_180 Hb_001454_400 Hb_001454_400 Hb_000085_180--Hb_001454_400 Hb_003683_050 Hb_003683_050 Hb_000085_180--Hb_003683_050 Hb_000618_040 Hb_000618_040 Hb_000085_180--Hb_000618_040 Hb_033843_010 Hb_033843_010 Hb_000085_180--Hb_033843_010 Hb_004310_020 Hb_004310_020 Hb_000085_180--Hb_004310_020 Hb_000092_100 Hb_000092_100 Hb_000085_180--Hb_000092_100 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_003878_010 Hb_003878_010 Hb_001454_400--Hb_003878_010 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060 Hb_001481_170 Hb_001481_170 Hb_003683_050--Hb_001481_170 Hb_001195_760 Hb_001195_760 Hb_003683_050--Hb_001195_760 Hb_001936_080 Hb_001936_080 Hb_003683_050--Hb_001936_080 Hb_003683_050--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003683_050--Hb_000670_020 Hb_000451_010 Hb_000451_010 Hb_000618_040--Hb_000451_010 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_007416_280 Hb_007416_280 Hb_000618_040--Hb_007416_280 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_010712_030 Hb_010712_030 Hb_004310_020--Hb_010712_030 Hb_000205_300 Hb_000205_300 Hb_004310_020--Hb_000205_300 Hb_158062_010 Hb_158062_010 Hb_004310_020--Hb_158062_010 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_001051_080 Hb_001051_080 Hb_004310_020--Hb_001051_080 Hb_003549_150 Hb_003549_150 Hb_004310_020--Hb_003549_150 Hb_002495_040 Hb_002495_040 Hb_000092_100--Hb_002495_040 Hb_000092_100--Hb_000465_430 Hb_001635_170 Hb_001635_170 Hb_000092_100--Hb_001635_170 Hb_000092_100--Hb_001936_080 Hb_096563_010 Hb_096563_010 Hb_000092_100--Hb_096563_010 Hb_003030_070 Hb_003030_070 Hb_000092_100--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.3322 21.2045 31.6246 36.0905 36.9188 40.282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4224 37.8574 30.3859 15.1021 7.92685

CAGE analysis