Hb_000085_190

Information

Type -
Description -
Location Contig85: 132184-135742
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37020g
description POPTRDRAFT_642244; cell division family protein
nr
ID AFC37491.1
description FtsZ1 protein [Manihot esculenta]
swissprot
ID Q42545
description Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2
trembl
ID H9AY28
description FtsZ1 protein OS=Manihot esculenta GN=ftsZ1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description cell division protein homolog chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60355: 132184-135718
cDNA
(Sanger)
(ID:Location)		 003_H22.ab1: 133838-135718 , 020_F12.ab1: 133882-135718 , 024_H19.ab1: 133943-135706

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_190 0.0 - - FtsZ1 protein [Manihot esculenta]
2 Hb_000445_070 0.0693165003 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
3 Hb_006120_040 0.0775958823 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
4 Hb_005731_110 0.0926487618 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
5 Hb_000757_030 0.0926757312 - - radical sam protein, putative [Ricinus communis]
6 Hb_005162_110 0.0961438589 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
7 Hb_000640_160 0.0978575027 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_087313_010 0.0979966606 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000011_240 0.0994915455 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
10 Hb_003225_020 0.1021471298 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
11 Hb_000254_100 0.1022692575 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
12 Hb_000012_270 0.1023959922 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
13 Hb_001930_030 0.1024164651 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
14 Hb_012438_030 0.1029123941 - - PREDICTED: protein sym-1 [Jatropha curcas]
15 Hb_005975_010 0.1036287962 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
16 Hb_002218_020 0.1059656522 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_000300_180 0.1074636736 - - transcription initiation factor brf1, putative [Ricinus communis]
18 Hb_021650_010 0.1076413145 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
19 Hb_000959_220 0.1082106382 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000224_150 0.1086581305 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000085_190 Hb_000085_190 Hb_000445_070 Hb_000445_070 Hb_000085_190--Hb_000445_070 Hb_006120_040 Hb_006120_040 Hb_000085_190--Hb_006120_040 Hb_005731_110 Hb_005731_110 Hb_000085_190--Hb_005731_110 Hb_000757_030 Hb_000757_030 Hb_000085_190--Hb_000757_030 Hb_005162_110 Hb_005162_110 Hb_000085_190--Hb_005162_110 Hb_000640_160 Hb_000640_160 Hb_000085_190--Hb_000640_160 Hb_001232_150 Hb_001232_150 Hb_000445_070--Hb_001232_150 Hb_000300_180 Hb_000300_180 Hb_000445_070--Hb_000300_180 Hb_001930_030 Hb_001930_030 Hb_000445_070--Hb_001930_030 Hb_003225_020 Hb_003225_020 Hb_000445_070--Hb_003225_020 Hb_021650_010 Hb_021650_010 Hb_000445_070--Hb_021650_010 Hb_000663_080 Hb_000663_080 Hb_006120_040--Hb_000663_080 Hb_000086_270 Hb_000086_270 Hb_006120_040--Hb_000086_270 Hb_003228_100 Hb_003228_100 Hb_006120_040--Hb_003228_100 Hb_087313_010 Hb_087313_010 Hb_006120_040--Hb_087313_010 Hb_000011_240 Hb_000011_240 Hb_006120_040--Hb_000011_240 Hb_005731_110--Hb_000640_160 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005731_110--Hb_005162_110 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_000757_030--Hb_000300_180 Hb_005542_130 Hb_005542_130 Hb_000757_030--Hb_005542_130 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000304_070 Hb_000304_070 Hb_000757_030--Hb_000304_070 Hb_003363_070 Hb_003363_070 Hb_000757_030--Hb_003363_070 Hb_010931_070 Hb_010931_070 Hb_000757_030--Hb_010931_070 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070 Hb_000640_160--Hb_003225_020 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1173 13.1635 36.6736 9.96155 10.4287 8.28852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.44321 11.1084 9.42172 9.29194 20.7086

CAGE analysis