Hb_000085_200

Information

Type -
Description -
Location Contig85: 149031-151715
Sequence    

Annotation

kegg
ID pxb:103927007
description V-type proton ATPase subunit e-like
nr
ID ABZ88805.1
description ATP synthase subunit H protein [Hevea brasiliensis]
swissprot
ID Q9FLN5
description V-type proton ATPase subunit e1 OS=Arabidopsis thaliana GN=VHA-e1 PE=2 SV=1
trembl
ID B3FNQ0
description ATP synthase subunit H protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0033179
description v-type proton atpase subunit e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60356: 149589-151885
cDNA
(Sanger)
(ID:Location)		 004_B03.ab1: 149682-151885 , 006_H24.ab1: 149653-151885 , 008_K08.ab1: 149680-151884 , 018_F21.ab1: 149680-151885 , 019_O17.ab1: 149680-151884 , 038_D16.ab1: 149653-151885 , 039_P23.ab1: 149755-151869 , 049_N12.ab1: 149744-151885 , 053_F04.ab1: 149728-151885

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_200 0.0 - - ATP synthase subunit H protein [Hevea brasiliensis]
2 Hb_011609_180 0.0651630495 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
3 Hb_000634_050 0.0841604198 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
4 Hb_002447_030 0.100308119 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
5 Hb_002529_100 0.1021448958 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
6 Hb_000008_320 0.1046150355 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
7 Hb_000417_110 0.1049343948 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
8 Hb_007021_020 0.1061749026 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
9 Hb_007741_050 0.1061891327 - - vesicle-associated membrane protein, putative [Ricinus communis]
10 Hb_005611_010 0.1065615149 - - PREDICTED: protein prune homolog [Jatropha curcas]
11 Hb_000563_590 0.1071265373 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_000212_260 0.1072732388 - - acyl-carrier-protein [Triadica sebifera]
13 Hb_001104_120 0.1079447254 - - -
14 Hb_001486_260 0.1091134489 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
15 Hb_001951_110 0.1091762441 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
16 Hb_000045_190 0.1113975895 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
17 Hb_001584_070 0.1120854864 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000526_150 0.1123162004 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
19 Hb_000362_210 0.1125495314 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
20 Hb_000483_160 0.1126785593 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_200 Hb_000085_200 Hb_011609_180 Hb_011609_180 Hb_000085_200--Hb_011609_180 Hb_000634_050 Hb_000634_050 Hb_000085_200--Hb_000634_050 Hb_002447_030 Hb_002447_030 Hb_000085_200--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000085_200--Hb_002529_100 Hb_000008_320 Hb_000008_320 Hb_000085_200--Hb_000008_320 Hb_000417_110 Hb_000417_110 Hb_000085_200--Hb_000417_110 Hb_011609_180--Hb_000634_050 Hb_000212_260 Hb_000212_260 Hb_011609_180--Hb_000212_260 Hb_007741_050 Hb_007741_050 Hb_011609_180--Hb_007741_050 Hb_000144_110 Hb_000144_110 Hb_011609_180--Hb_000144_110 Hb_000648_060 Hb_000648_060 Hb_011609_180--Hb_000648_060 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_002447_030--Hb_000008_320 Hb_002447_030--Hb_000045_190 Hb_024650_020 Hb_024650_020 Hb_002447_030--Hb_024650_020 Hb_002447_030--Hb_000634_050 Hb_001722_040 Hb_001722_040 Hb_002447_030--Hb_001722_040 Hb_000362_210 Hb_000362_210 Hb_002447_030--Hb_000362_210 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_000008_320--Hb_002529_100 Hb_000926_290 Hb_000926_290 Hb_000008_320--Hb_000926_290 Hb_000008_320--Hb_001722_040 Hb_003050_230 Hb_003050_230 Hb_000008_320--Hb_003050_230 Hb_000417_110--Hb_001584_070 Hb_000417_110--Hb_001951_110 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.5729 3.75765 4.29128 8.59144 19.2504 22.2933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.4085 53.4231 24.4311 5.33493 0.966877

CAGE analysis