Hb_000085_210

Information

Type -
Description -
Location Contig85: 159438-167408
Sequence    

Annotation

kegg
ID rcu:RCOM_0045870
description DNA topoisomerase type I, putative (EC:1.3.1.74)
nr
ID XP_002529020.1
description DNA topoisomerase type I, putative [Ricinus communis]
swissprot
ID P30181
description DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1
trembl
ID B9SSQ1
description DNA topoisomerase type I, putative OS=Ricinus communis GN=RCOM_0045870 PE=4 SV=1
Gene Ontology
ID GO:0005694
description dna topoisomerase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60358: 159136-167437 , PASA_asmbl_60359: 159136-167437 , PASA_asmbl_60360: 164840-165127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_210 0.0 - - DNA topoisomerase type I, putative [Ricinus communis]
2 Hb_000795_040 0.0503472261 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
3 Hb_000111_170 0.0554585708 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
4 Hb_005288_070 0.0677548451 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_000676_330 0.0682304459 - - protein with unknown function [Ricinus communis]
6 Hb_017469_110 0.0696014611 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
7 Hb_001439_220 0.0722179404 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
8 Hb_000749_010 0.0724045316 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
9 Hb_004619_060 0.0761134994 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
10 Hb_000661_120 0.0763575793 - - cap binding protein, putative [Ricinus communis]
11 Hb_000996_020 0.0777739762 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
12 Hb_001377_190 0.078909373 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
13 Hb_000336_020 0.0790952701 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
14 Hb_001089_030 0.0791136381 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
15 Hb_000445_060 0.0792252837 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_004994_120 0.0797825476 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
17 Hb_033312_130 0.080539995 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
18 Hb_007283_010 0.0811353102 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
19 Hb_004976_010 0.0816966662 - - hypothetical protein RCOM_1429110 [Ricinus communis]
20 Hb_000363_310 0.082208437 - - DNA topoisomerase type I, putative [Ricinus communis]

Gene co-expression network

sample Hb_000085_210 Hb_000085_210 Hb_000795_040 Hb_000795_040 Hb_000085_210--Hb_000795_040 Hb_000111_170 Hb_000111_170 Hb_000085_210--Hb_000111_170 Hb_005288_070 Hb_005288_070 Hb_000085_210--Hb_005288_070 Hb_000676_330 Hb_000676_330 Hb_000085_210--Hb_000676_330 Hb_017469_110 Hb_017469_110 Hb_000085_210--Hb_017469_110 Hb_001439_220 Hb_001439_220 Hb_000085_210--Hb_001439_220 Hb_002581_010 Hb_002581_010 Hb_000795_040--Hb_002581_010 Hb_011174_020 Hb_011174_020 Hb_000795_040--Hb_011174_020 Hb_000795_040--Hb_017469_110 Hb_001925_060 Hb_001925_060 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_005288_070--Hb_030414_040 Hb_007044_110 Hb_007044_110 Hb_005288_070--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_005288_070--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_005288_070--Hb_000457_230 Hb_000206_160 Hb_000206_160 Hb_000676_330--Hb_000206_160 Hb_002768_050 Hb_002768_050 Hb_000676_330--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000676_330--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000676_330--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000676_330--Hb_000868_120 Hb_027506_010 Hb_027506_010 Hb_000676_330--Hb_027506_010 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_017469_110--Hb_011174_020 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_017469_110--Hb_002581_010 Hb_001008_070 Hb_001008_070 Hb_017469_110--Hb_001008_070 Hb_033642_120 Hb_033642_120 Hb_001439_220--Hb_033642_120 Hb_001439_220--Hb_000868_120 Hb_010287_020 Hb_010287_020 Hb_001439_220--Hb_010287_020 Hb_001439_220--Hb_000445_060 Hb_002435_100 Hb_002435_100 Hb_001439_220--Hb_002435_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7162 32.9593 30.5482 21.5611 20.704 17.1473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7358 22.3957 10.6259 24.5846 35.3464

CAGE analysis