Hb_000085_280

Information

Type -
Description -
Location Contig85: 250681-254808
Sequence    

Annotation

kegg
ID rcu:RCOM_0046280
description Beta-(1,2)-xylosyltransferase, putative (EC:2.4.2.38)
nr
ID XP_012070943.1
description PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
swissprot
ID Q9LDH0
description Beta-(1,2)-xylosyltransferase OS=Arabidopsis thaliana GN=XYLT PE=1 SV=1
trembl
ID A0A067L588
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00976 PE=4 SV=1
Gene Ontology
ID GO:0016757
description beta-( )-xylosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60367: 250951-254797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_280 0.0 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
2 Hb_035524_030 0.0591906062 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002290_060 0.0769682314 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
4 Hb_013405_130 0.0782917802 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
5 Hb_005288_120 0.0851609303 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
6 Hb_019613_020 0.0870466774 - - phospholipase C, putative [Ricinus communis]
7 Hb_000186_010 0.090087243 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
8 Hb_003777_220 0.0965126062 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
9 Hb_000028_050 0.1009184439 - - aldose-1-epimerase, putative [Ricinus communis]
10 Hb_077219_010 0.1021628266 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002391_110 0.103255132 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
12 Hb_003050_040 0.1082699676 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
13 Hb_010261_020 0.1085038911 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
14 Hb_003813_100 0.1089065319 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
15 Hb_024714_030 0.1092221939 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
16 Hb_019654_070 0.1101049576 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
17 Hb_000671_100 0.1138879997 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
18 Hb_003352_050 0.1152036247 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
19 Hb_005488_070 0.1154875674 - - putative cytochrome P450 [Oryza sativa Japonica Group]
20 Hb_013479_020 0.1157630776 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_000085_280 Hb_000085_280 Hb_035524_030 Hb_035524_030 Hb_000085_280--Hb_035524_030 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_013405_130 Hb_013405_130 Hb_000085_280--Hb_013405_130 Hb_005288_120 Hb_005288_120 Hb_000085_280--Hb_005288_120 Hb_019613_020 Hb_019613_020 Hb_000085_280--Hb_019613_020 Hb_000186_010 Hb_000186_010 Hb_000085_280--Hb_000186_010 Hb_035524_030--Hb_019613_020 Hb_035524_030--Hb_005288_120 Hb_000671_100 Hb_000671_100 Hb_035524_030--Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_035524_030--Hb_024714_030 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010 Hb_002290_060--Hb_035524_030 Hb_001477_010 Hb_001477_010 Hb_002290_060--Hb_001477_010 Hb_002955_010 Hb_002955_010 Hb_002290_060--Hb_002955_010 Hb_077219_010 Hb_077219_010 Hb_002290_060--Hb_077219_010 Hb_002290_060--Hb_024714_030 Hb_010261_020 Hb_010261_020 Hb_013405_130--Hb_010261_020 Hb_013405_130--Hb_005288_120 Hb_013405_130--Hb_000186_010 Hb_000042_230 Hb_000042_230 Hb_013405_130--Hb_000042_230 Hb_000028_030 Hb_000028_030 Hb_013405_130--Hb_000028_030 Hb_005288_120--Hb_010261_020 Hb_000017_340 Hb_000017_340 Hb_005288_120--Hb_000017_340 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_005288_120--Hb_000671_100 Hb_019613_020--Hb_127979_010 Hb_176022_020 Hb_176022_020 Hb_019613_020--Hb_176022_020 Hb_003404_030 Hb_003404_030 Hb_019613_020--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_019613_020--Hb_000057_060 Hb_000186_010--Hb_000042_230 Hb_000028_050 Hb_000028_050 Hb_000186_010--Hb_000028_050 Hb_000186_010--Hb_005288_120 Hb_001252_170 Hb_001252_170 Hb_000186_010--Hb_001252_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.299 14.0814 7.4513 16.4936 140.177 240.184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.552 42.0378 81.0774 26.0242 17.2337

CAGE analysis