Hb_000085_300

Information

Type -
Description -
Location Contig85: 287489-289451
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_300 0.0 - - -
2 Hb_183963_020 0.0646492594 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
3 Hb_002387_060 0.0800763959 - - conserved hypothetical protein [Ricinus communis]
4 Hb_025087_010 0.0890054347 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
5 Hb_000032_220 0.1003599668 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
6 Hb_007021_020 0.1023772804 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_001722_040 0.1045650488 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
8 Hb_015934_020 0.1060294069 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
9 Hb_002291_030 0.106888861 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
10 Hb_005618_040 0.1072709916 - - -
11 Hb_002282_020 0.1074824115 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_000261_460 0.1079245772 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_005000_290 0.1094931416 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
14 Hb_000051_040 0.1095555577 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
15 Hb_012522_030 0.1105974856 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_001366_230 0.112964244 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000111_280 0.1171008515 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
18 Hb_008695_190 0.1179551235 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
19 Hb_005615_070 0.1184841064 - - Rab7 [Hevea brasiliensis]
20 Hb_000032_260 0.1187537149 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_300 Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_000085_300--Hb_183963_020 Hb_002387_060 Hb_002387_060 Hb_000085_300--Hb_002387_060 Hb_025087_010 Hb_025087_010 Hb_000085_300--Hb_025087_010 Hb_000032_220 Hb_000032_220 Hb_000085_300--Hb_000032_220 Hb_007021_020 Hb_007021_020 Hb_000085_300--Hb_007021_020 Hb_001722_040 Hb_001722_040 Hb_000085_300--Hb_001722_040 Hb_183963_020--Hb_025087_010 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_183963_020--Hb_007021_020 Hb_183963_020--Hb_002387_060 Hb_012522_030 Hb_012522_030 Hb_002387_060--Hb_012522_030 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_002387_060--Hb_000032_220 Hb_002291_030 Hb_002291_030 Hb_002387_060--Hb_002291_030 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_000032_220--Hb_015934_020 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62379 0.281911 0.121146 0.36651 3.15744 3.17873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17094 7.32763 5.73265 1.63963 0.276056

CAGE analysis