Hb_000085_320

Information

Type -
Description -
Location Contig85: 293894-294650
Sequence    

Annotation

kegg
ID tcc:TCM_030749
description hypothetical protein
nr
ID XP_007020646.1
description Uncharacterized protein TCM_030749 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F585
description Uncharacterized protein OS=Theobroma cacao GN=TCM_030749 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60373: 293700-294623 , PASA_asmbl_60374: 293782-294623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_320 0.0 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
2 Hb_002874_190 0.0690820285 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
3 Hb_000007_100 0.0713884779 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
4 Hb_004032_100 0.0723542603 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
5 Hb_001008_060 0.0741326767 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
6 Hb_001383_060 0.0746676071 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_000380_190 0.0750038908 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
8 Hb_000024_080 0.0750879103 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
9 Hb_003927_130 0.0778276603 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
10 Hb_004837_140 0.0788884904 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
11 Hb_032202_090 0.079665462 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
12 Hb_000086_070 0.0803094726 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
13 Hb_004032_010 0.0811064685 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
14 Hb_000926_250 0.0815470844 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
15 Hb_125000_010 0.0827723493 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
16 Hb_010180_020 0.0828159971 - - hypothetical protein glysoja_030394 [Glycine soja]
17 Hb_009773_020 0.0828530159 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
18 Hb_002207_110 0.0847460163 - - -
19 Hb_002078_150 0.0852475396 - - protein with unknown function [Ricinus communis]
20 Hb_001604_080 0.0854503363 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_320 Hb_000085_320 Hb_002874_190 Hb_002874_190 Hb_000085_320--Hb_002874_190 Hb_000007_100 Hb_000007_100 Hb_000085_320--Hb_000007_100 Hb_004032_100 Hb_004032_100 Hb_000085_320--Hb_004032_100 Hb_001008_060 Hb_001008_060 Hb_000085_320--Hb_001008_060 Hb_001383_060 Hb_001383_060 Hb_000085_320--Hb_001383_060 Hb_000380_190 Hb_000380_190 Hb_000085_320--Hb_000380_190 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000007_100--Hb_000380_190 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_009711_030 Hb_009711_030 Hb_001008_060--Hb_009711_030 Hb_002078_450 Hb_002078_450 Hb_001008_060--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_001008_060--Hb_022250_040 Hb_011794_070 Hb_011794_070 Hb_001008_060--Hb_011794_070 Hb_000703_140 Hb_000703_140 Hb_001008_060--Hb_000703_140 Hb_003927_130 Hb_003927_130 Hb_001383_060--Hb_003927_130 Hb_001433_050 Hb_001433_050 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_007479_020 Hb_007479_020 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750 Hb_002311_350 Hb_002311_350 Hb_000380_190--Hb_002311_350 Hb_001477_110 Hb_001477_110 Hb_000380_190--Hb_001477_110 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2628 5.62132 6.18363 13.6656 17.8867 22.1782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2868 35.9237 21.4471 7.52036 5.41421

CAGE analysis