Hb_000085_330

Information

Type -
Description -
Location Contig85: 294602-298331
Sequence    

Annotation

kegg
ID rcu:RCOM_0046320
description 40S ribosomal protein S8, putative
nr
ID XP_012070941.1
description PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
swissprot
ID Q08069
description 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2
trembl
ID A0A067KSQ5
description 40S ribosomal protein S8 OS=Jatropha curcas GN=JCGZ_00973 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60375: 294714-298379 , PASA_asmbl_60376: 295981-296102
cDNA
(Sanger)
(ID:Location)		 007_K14.ab1: 294966-298274 , 010_C07.ab1: 297507-298379 , 014_C05.ab1: 295610-298273 , 019_J10.ab1: 295685-298285 , 024_O24.ab1: 297427-298268 , 026_H12.ab1: 297436-298267 , 034_J04.ab1: 294895-298274 , 050_C18.ab1: 297385-298264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_330 0.0 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
2 Hb_000163_130 0.0719135757 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
3 Hb_002835_320 0.0782509538 - - 60S ribosomal protein L27B [Hevea brasiliensis]
4 Hb_148930_010 0.0788906654 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
5 Hb_001123_120 0.0792397508 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
6 Hb_183086_040 0.0850780805 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
7 Hb_000645_190 0.0858752813 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
8 Hb_000236_460 0.0903794215 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
9 Hb_000028_400 0.0939238017 - - Protein SSU72, putative [Ricinus communis]
10 Hb_000905_180 0.0958897563 - - 60S ribosomal protein L31A [Hevea brasiliensis]
11 Hb_000224_090 0.096005525 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
12 Hb_012265_010 0.0962762895 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
13 Hb_007575_070 0.0985303511 - - Histone H3.2 [Glycine soja]
14 Hb_001780_050 0.0990138753 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
15 Hb_026398_010 0.1011946251 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
16 Hb_097007_010 0.1012380008 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
17 Hb_017862_010 0.1019581455 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_003549_020 0.1021304499 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001248_080 0.1023194678 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
20 Hb_004724_160 0.1029909113 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_330 Hb_000085_330 Hb_000163_130 Hb_000163_130 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_148930_010 Hb_148930_010 Hb_000085_330--Hb_148930_010 Hb_001123_120 Hb_001123_120 Hb_000085_330--Hb_001123_120 Hb_183086_040 Hb_183086_040 Hb_000085_330--Hb_183086_040 Hb_000645_190 Hb_000645_190 Hb_000085_330--Hb_000645_190 Hb_001780_050 Hb_001780_050 Hb_000163_130--Hb_001780_050 Hb_000163_130--Hb_002835_320 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_002835_320--Hb_148930_010 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_000922_100 Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_183086_040--Hb_000780_210 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
116.507 52.2199 43.9376 75.7107 99.0208 229.772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
492.361 742.688 273.45 142.549 41.9146

CAGE analysis