Hb_000085_360

Information

Type -
Description -
Location Contig85: 320746-327304
Sequence    

Annotation

kegg
ID rcu:RCOM_0046500
description Chromosome-associated kinesin KIF4A, putative
nr
ID XP_012070955.1
description PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
swissprot
ID Q8L7Y8
description Kinesin-like protein KIN12B OS=Arabidopsis thaliana GN=KIN12B PE=1 SV=1
trembl
ID A0A067L431
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_00987 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kin12b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60383: 320783-325121 , PASA_asmbl_60384: 325361-326878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_360 0.0 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
2 Hb_119044_040 0.0534702283 - - cyclin B, putative [Ricinus communis]
3 Hb_004631_040 0.0599663203 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
4 Hb_005276_090 0.06053726 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
5 Hb_001279_110 0.0631484973 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
6 Hb_000038_070 0.063586301 - - conserved hypothetical protein [Ricinus communis]
7 Hb_080952_060 0.067402141 - - PREDICTED: patellin-4 [Populus euphratica]
8 Hb_011849_010 0.067504127 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
9 Hb_001998_180 0.0701843081 - - actin binding protein, putative [Ricinus communis]
10 Hb_000480_060 0.0707743481 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
11 Hb_000856_390 0.0737266595 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000060_030 0.0741175684 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
13 Hb_003776_050 0.0765039274 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
14 Hb_181744_010 0.076723807 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
15 Hb_003106_090 0.0767384307 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
16 Hb_002374_090 0.078764216 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
17 Hb_001307_150 0.0821194379 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_000116_050 0.0833957836 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
19 Hb_004592_030 0.0838399198 - - unknown [Lotus japonicus]
20 Hb_004635_020 0.0848709187 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]

Gene co-expression network

sample Hb_000085_360 Hb_000085_360 Hb_119044_040 Hb_119044_040 Hb_000085_360--Hb_119044_040 Hb_004631_040 Hb_004631_040 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_001279_110 Hb_001279_110 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_003776_050 Hb_003776_050 Hb_119044_040--Hb_003776_050 Hb_119044_040--Hb_001279_110 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_004592_030 Hb_004592_030 Hb_004631_040--Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004631_040--Hb_004197_020 Hb_004631_040--Hb_001279_110 Hb_002874_010 Hb_002874_010 Hb_004631_040--Hb_002874_010 Hb_000480_060 Hb_000480_060 Hb_005276_090--Hb_000480_060 Hb_003106_090 Hb_003106_090 Hb_005276_090--Hb_003106_090 Hb_005276_090--Hb_119044_040 Hb_002374_090 Hb_002374_090 Hb_005276_090--Hb_002374_090 Hb_005276_090--Hb_003776_050 Hb_000060_030 Hb_000060_030 Hb_001279_110--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001279_110--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_001279_110--Hb_002928_150 Hb_000038_070--Hb_011849_010 Hb_000856_390 Hb_000856_390 Hb_000038_070--Hb_000856_390 Hb_000038_070--Hb_002374_090 Hb_181744_010 Hb_181744_010 Hb_000038_070--Hb_181744_010 Hb_000038_070--Hb_003106_090 Hb_001998_180 Hb_001998_180 Hb_080952_060--Hb_001998_180 Hb_080952_060--Hb_003776_050 Hb_080952_060--Hb_119044_040 Hb_080952_060--Hb_001279_110 Hb_080952_060--Hb_000060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0806274 0.392859 18.9353 8.74326 0.00934436 0.0174201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0218645 0.02581 0 2.31041 1.16136

CAGE analysis