Hb_000085_380

Information

Type -
Description -
Location Contig85: 358957-362277
Sequence    

Annotation

kegg
ID rcu:RCOM_0046620
description hypothetical protein
nr
ID XP_002529042.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSS3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0046620 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60387: 359104-362286 , PASA_asmbl_60389: 359617-360155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002833_020 0.10692579 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_000318_170 0.1074191574 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
4 Hb_001221_390 0.1111880722 - - Phospholipase C 4 precursor, putative [Ricinus communis]
5 Hb_001008_110 0.1136742747 - - -
6 Hb_033234_010 0.1148108733 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
7 Hb_003106_110 0.1162763252 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
8 Hb_005485_070 0.1166533432 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_003106_230 0.1184927534 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
10 Hb_073808_010 0.1209697153 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
11 Hb_000003_020 0.1213845875 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
12 Hb_000120_310 0.1228027129 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
13 Hb_003142_060 0.1244838047 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001832_210 0.1253146353 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
15 Hb_002671_060 0.1258652306 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
16 Hb_042202_020 0.1269188825 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
17 Hb_002685_160 0.1276341073 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_000438_010 0.1276614944 - - -
19 Hb_000116_240 0.1276923494 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
20 Hb_000139_510 0.1314452162 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_380 Hb_000085_380 Hb_002833_020 Hb_002833_020 Hb_000085_380--Hb_002833_020 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_001008_110 Hb_001008_110 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030 Hb_010050_020 Hb_010050_020 Hb_001221_390--Hb_010050_020 Hb_005724_040 Hb_005724_040 Hb_001221_390--Hb_005724_040 Hb_001221_390--Hb_000318_170 Hb_001221_390--Hb_000791_050 Hb_012760_090 Hb_012760_090 Hb_001221_390--Hb_012760_090 Hb_001008_110--Hb_000417_280 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_033234_010--Hb_042202_020 Hb_033234_010--Hb_002833_020 Hb_000072_020 Hb_000072_020 Hb_033234_010--Hb_000072_020 Hb_132840_030 Hb_132840_030 Hb_033234_010--Hb_132840_030 Hb_033234_010--Hb_000120_310 Hb_000739_160 Hb_000739_160 Hb_003106_110--Hb_000739_160 Hb_015306_010 Hb_015306_010 Hb_003106_110--Hb_015306_010 Hb_002301_370 Hb_002301_370 Hb_003106_110--Hb_002301_370 Hb_003106_110--Hb_005485_070 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.96044 64.1681 58.9247 95.9434 5.60435 9.51521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06059 1.69701 3.71361 80.8368 49.4393

CAGE analysis