Hb_000085_390

Information

Type -
Description -
Location Contig85: 362561-366278
Sequence    

Annotation

kegg
ID rcu:RCOM_0046630
description hypothetical protein
nr
ID CBI26731.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9FJ57
description Protein TORNADO 1 OS=Arabidopsis thaliana GN=TRN1 PE=2 SV=1
trembl
ID A0A067KSZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00989 PE=4 SV=1
Gene Ontology
ID GO:0048513
description protein tornado 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_390 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000125_220 0.1699787265 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
3 Hb_098785_010 0.2877890808 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_000094_240 0.2992764653 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
5 Hb_000086_670 0.3003569701 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
6 Hb_000302_210 0.301901774 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012754_020 0.3029201098 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
8 Hb_030736_030 0.3071204829 - - hypothetical protein VITISV_006651 [Vitis vinifera]
9 Hb_001493_160 0.3151583378 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
10 Hb_000985_070 0.3193744438 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
11 Hb_077562_020 0.3239152696 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
12 Hb_000143_020 0.3247592345 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
13 Hb_000552_030 0.3278638194 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
14 Hb_000809_070 0.3286064104 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 36-like [Jatropha curcas]
15 Hb_001691_220 0.3330374447 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
16 Hb_003549_010 0.3353198993 - - PREDICTED: uncharacterized protein LOC105647434 [Jatropha curcas]
17 Hb_000679_280 0.335546845 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
18 Hb_001221_280 0.3372105421 - - -
19 Hb_002498_290 0.3384147724 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
20 Hb_006472_080 0.3408543426 - - -

Gene co-expression network

sample Hb_000085_390 Hb_000085_390 Hb_000125_220 Hb_000125_220 Hb_000085_390--Hb_000125_220 Hb_098785_010 Hb_098785_010 Hb_000085_390--Hb_098785_010 Hb_000094_240 Hb_000094_240 Hb_000085_390--Hb_000094_240 Hb_000086_670 Hb_000086_670 Hb_000085_390--Hb_000086_670 Hb_000302_210 Hb_000302_210 Hb_000085_390--Hb_000302_210 Hb_012754_020 Hb_012754_020 Hb_000085_390--Hb_012754_020 Hb_000985_070 Hb_000985_070 Hb_000125_220--Hb_000985_070 Hb_000125_220--Hb_098785_010 Hb_000125_220--Hb_000302_210 Hb_000125_220--Hb_012754_020 Hb_012092_100 Hb_012092_100 Hb_000125_220--Hb_012092_100 Hb_098785_010--Hb_000302_210 Hb_006569_070 Hb_006569_070 Hb_098785_010--Hb_006569_070 Hb_098785_010--Hb_000985_070 Hb_003799_020 Hb_003799_020 Hb_098785_010--Hb_003799_020 Hb_001221_280 Hb_001221_280 Hb_098785_010--Hb_001221_280 Hb_163206_010 Hb_163206_010 Hb_000094_240--Hb_163206_010 Hb_000012_040 Hb_000012_040 Hb_000094_240--Hb_000012_040 Hb_000926_100 Hb_000926_100 Hb_000094_240--Hb_000926_100 Hb_000143_020 Hb_000143_020 Hb_000094_240--Hb_000143_020 Hb_007672_030 Hb_007672_030 Hb_000094_240--Hb_007672_030 Hb_007002_040 Hb_007002_040 Hb_000086_670--Hb_007002_040 Hb_001080_050 Hb_001080_050 Hb_000086_670--Hb_001080_050 Hb_000960_090 Hb_000960_090 Hb_000086_670--Hb_000960_090 Hb_003784_040 Hb_003784_040 Hb_000086_670--Hb_003784_040 Hb_000010_300 Hb_000010_300 Hb_000086_670--Hb_000010_300 Hb_001780_080 Hb_001780_080 Hb_000086_670--Hb_001780_080 Hb_000302_210--Hb_000985_070 Hb_000302_210--Hb_012754_020 Hb_000302_210--Hb_003799_020 Hb_000925_040 Hb_000925_040 Hb_000302_210--Hb_000925_040 Hb_012754_020--Hb_000985_070 Hb_003185_090 Hb_003185_090 Hb_012754_020--Hb_003185_090 Hb_001493_160 Hb_001493_160 Hb_012754_020--Hb_001493_160 Hb_164162_010 Hb_164162_010 Hb_012754_020--Hb_164162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0510576 0.0162844 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0257799 0.032197 0

CAGE analysis