Hb_000086_050

Information

Type -
Description -
Location Contig86: 22571-39101
Sequence    

Annotation

kegg
ID rcu:RCOM_0499140
description Structural maintenance of chromosome 1 protein, putative
nr
ID XP_012085314.1
description PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
swissprot
ID Q6Q1P4
description Structural maintenance of chromosomes protein 1 OS=Arabidopsis thaliana GN=SMC1 PE=2 SV=2
trembl
ID A0A067JRK9
description Structural maintenance of chromosomes protein OS=Jatropha curcas GN=JCGZ_17685 PE=3 SV=1
Gene Ontology
ID GO:0005634
description structural maintenance of chromosomes protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60690: 22621-36947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_050 0.0 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
2 Hb_009449_090 0.0657108998 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
3 Hb_007283_030 0.0673204827 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
4 Hb_007576_220 0.0743236237 - - PREDICTED: kanadaptin [Jatropha curcas]
5 Hb_002687_090 0.0749815837 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
6 Hb_007576_230 0.0773648026 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
7 Hb_155159_010 0.0799965321 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
8 Hb_000300_250 0.0807538548 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
9 Hb_005539_040 0.0831389064 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
10 Hb_007818_040 0.0870163484 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
11 Hb_002073_280 0.0879414566 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_013405_160 0.0892345838 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
13 Hb_002282_060 0.0896133947 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_003895_020 0.0925279167 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
15 Hb_000732_070 0.092705343 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_011202_030 0.0950762279 - - arsenite-resistance protein, putative [Ricinus communis]
17 Hb_000185_150 0.0968351085 - - Heme-binding protein, putative [Ricinus communis]
18 Hb_000024_120 0.0975941512 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
19 Hb_001221_090 0.0982890416 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
20 Hb_000526_060 0.1004586185 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]

Gene co-expression network

sample Hb_000086_050 Hb_000086_050 Hb_009449_090 Hb_009449_090 Hb_000086_050--Hb_009449_090 Hb_007283_030 Hb_007283_030 Hb_000086_050--Hb_007283_030 Hb_007576_220 Hb_007576_220 Hb_000086_050--Hb_007576_220 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_007576_230 Hb_007576_230 Hb_000086_050--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_000086_050--Hb_155159_010 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_009449_090--Hb_007283_030 Hb_007818_040 Hb_007818_040 Hb_007283_030--Hb_007818_040 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_007283_030--Hb_007576_230 Hb_000377_050 Hb_000377_050 Hb_007283_030--Hb_000377_050 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_007576_220--Hb_005539_040 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_013405_160 Hb_013405_160 Hb_002687_090--Hb_013405_160 Hb_000703_130 Hb_000703_130 Hb_002687_090--Hb_000703_130 Hb_007818_030 Hb_007818_030 Hb_002687_090--Hb_007818_030 Hb_000579_010 Hb_000579_010 Hb_002687_090--Hb_000579_010 Hb_002687_090--Hb_007283_030 Hb_007576_230--Hb_007818_040 Hb_007576_230--Hb_009449_090 Hb_000300_250 Hb_000300_250 Hb_007576_230--Hb_000300_250 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.67 50.683 30.5443 12.8566 27.8903 19.9708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88791 5.95165 6.88367 17.2874 29.5392

CAGE analysis