Hb_000086_070

Information

Type -
Description -
Location Contig86: 48479-54632
Sequence    

Annotation

kegg
ID tcc:TCM_004025
description Peptidase S24/S26A/S26B/S26C family protein isoform 1
nr
ID XP_007050285.1
description Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
swissprot
ID Q9CQU8
description Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1
trembl
ID A0A061DPT7
description Peptidase S24/S26A/S26B/S26C family protein isoform 1 OS=Theobroma cacao GN=TCM_004025 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mitochondrial inner membrane protease subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60694: 48496-54549 , PASA_asmbl_60695: 48499-54558
cDNA
(Sanger)
(ID:Location)		 046_N04.ab1: 48565-54397

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_070 0.0 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
2 Hb_003927_130 0.0477075234 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
3 Hb_001829_060 0.063173074 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_001109_020 0.0646757419 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000444_050 0.0660948362 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
6 Hb_000883_050 0.0707133653 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
7 Hb_001383_060 0.071911901 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
8 Hb_002874_190 0.076672564 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
9 Hb_009666_040 0.0772109103 - - glutathione transferase, putative [Ricinus communis]
10 Hb_101705_030 0.0780526966 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
11 Hb_011794_070 0.0781741887 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
12 Hb_003455_040 0.0788572141 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
13 Hb_000329_310 0.0793272451 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
14 Hb_000046_110 0.0796108654 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
15 Hb_018133_060 0.080013092 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
16 Hb_000087_020 0.0801307605 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
17 Hb_000085_320 0.0803094726 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
18 Hb_001433_050 0.0811223112 - - 60S ribosomal protein L18, putative [Ricinus communis]
19 Hb_001141_030 0.0820473691 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
20 Hb_003632_010 0.0825573935 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000086_070 Hb_000086_070 Hb_003927_130 Hb_003927_130 Hb_000086_070--Hb_003927_130 Hb_001829_060 Hb_001829_060 Hb_000086_070--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_000086_070--Hb_001109_020 Hb_000444_050 Hb_000444_050 Hb_000086_070--Hb_000444_050 Hb_000883_050 Hb_000883_050 Hb_000086_070--Hb_000883_050 Hb_001383_060 Hb_001383_060 Hb_000086_070--Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_003927_130--Hb_001829_060 Hb_003927_130--Hb_001109_020 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_003927_130--Hb_000883_050 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_001109_020--Hb_000046_110 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_001109_020--Hb_000883_050 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000444_050--Hb_000205_270 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_023732_070 Hb_023732_070 Hb_000444_050--Hb_023732_070 Hb_000444_050--Hb_000329_310 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000703_140 Hb_000703_140 Hb_000883_050--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000883_050--Hb_000260_080 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_007479_020 Hb_007479_020 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.9849 12.9975 28.2886 34.9721 45.7979 87.9565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.325 147.218 95.468 28.9256 21.2238

CAGE analysis