Hb_000086_080

Information

Type -
Description -
Location Contig86: 55989-58709
Sequence    

Annotation

kegg
ID rcu:RCOM_0499370
description hypothetical protein
nr
ID XP_002532033.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94K75
description Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1
trembl
ID B9T1B2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0499370 PE=4 SV=1
Gene Ontology
ID GO:0006353
description rho-n domain-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60697: 55978-58723 , PASA_asmbl_60698: 56161-56307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007192_030 0.0690798603 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
3 Hb_073973_090 0.0714341963 - - Aminotransferase ybdL, putative [Ricinus communis]
4 Hb_003266_030 0.0720479947 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
5 Hb_011671_260 0.0767476049 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
6 Hb_000023_360 0.0769049692 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
7 Hb_003053_110 0.077121648 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
8 Hb_008695_200 0.0779267345 - - Protein grpE, putative [Ricinus communis]
9 Hb_000926_080 0.0784359197 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
10 Hb_001369_790 0.0816485964 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
11 Hb_003994_160 0.0821768327 - - PREDICTED: uncharacterized protein LOC105131691 isoform X5 [Populus euphratica]
12 Hb_001675_140 0.0842616682 - - hypothetical protein L484_026216 [Morus notabilis]
13 Hb_007904_230 0.085598146 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
14 Hb_006907_060 0.0867654663 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_049575_010 0.0867741066 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
16 Hb_004965_110 0.086822447 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
17 Hb_002053_010 0.0871032717 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
18 Hb_002762_110 0.0887151687 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001882_010 0.0888746583 - - -
20 Hb_000200_300 0.0894998419 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_080 Hb_000086_080 Hb_007192_030 Hb_007192_030 Hb_000086_080--Hb_007192_030 Hb_073973_090 Hb_073973_090 Hb_000086_080--Hb_073973_090 Hb_003266_030 Hb_003266_030 Hb_000086_080--Hb_003266_030 Hb_011671_260 Hb_011671_260 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110 Hb_001369_790 Hb_001369_790 Hb_007192_030--Hb_001369_790 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_073973_090--Hb_000023_360 Hb_002631_240 Hb_002631_240 Hb_073973_090--Hb_002631_240 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_000537_100 Hb_000537_100 Hb_073973_090--Hb_000537_100 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_011671_260--Hb_002631_240 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_011671_260--Hb_004965_110 Hb_005511_140 Hb_005511_140 Hb_000023_360--Hb_005511_140 Hb_001675_140 Hb_001675_140 Hb_000023_360--Hb_001675_140 Hb_062226_060 Hb_062226_060 Hb_000023_360--Hb_062226_060 Hb_158530_020 Hb_158530_020 Hb_000023_360--Hb_158530_020 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0307 14.083 37.6758 33.9801 7.41029 14.1316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6341 27.9291 15.6945 14.5652 44.3528

CAGE analysis