Hb_000086_100

Information

Type -
Description -
Location Contig86: 79073-79651
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24730g
description POPTRDRAFT_205887; hypothetical protein
nr
ID XP_002306857.2
description hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
swissprot
ID O82268
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1
trembl
ID A9PEU5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24730g PE=2 SV=1
Gene Ontology
ID GO:0009855
description protein light-dependent short hypocotyls 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_100 0.0 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
2 Hb_001351_080 0.154602569 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
3 Hb_010831_020 0.1742284094 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000886_060 0.1772955872 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
5 Hb_001691_150 0.1790100864 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
6 Hb_003038_220 0.1810174878 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
7 Hb_001493_010 0.1940296686 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
8 Hb_000453_100 0.2000989933 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
9 Hb_009476_140 0.2009579653 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
10 Hb_001052_040 0.2043756559 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
11 Hb_003376_070 0.204939669 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
12 Hb_000457_140 0.2051493928 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
13 Hb_058381_010 0.2082662974 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
14 Hb_015354_010 0.2110225758 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_116638_010 0.2131359363 - - conserved hypothetical protein [Ricinus communis]
16 Hb_170487_010 0.2149509254 - - -
17 Hb_142751_010 0.2191691551 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000359_140 0.2212807044 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
19 Hb_054885_010 0.2222385107 - - -
20 Hb_002151_090 0.2273301291 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_100 Hb_000086_100 Hb_001351_080 Hb_001351_080 Hb_000086_100--Hb_001351_080 Hb_010831_020 Hb_010831_020 Hb_000086_100--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_000086_100--Hb_000886_060 Hb_001691_150 Hb_001691_150 Hb_000086_100--Hb_001691_150 Hb_003038_220 Hb_003038_220 Hb_000086_100--Hb_003038_220 Hb_001493_010 Hb_001493_010 Hb_000086_100--Hb_001493_010 Hb_001351_080--Hb_001691_150 Hb_000525_010 Hb_000525_010 Hb_001351_080--Hb_000525_010 Hb_000665_010 Hb_000665_010 Hb_001351_080--Hb_000665_010 Hb_000418_070 Hb_000418_070 Hb_001351_080--Hb_000418_070 Hb_012753_130 Hb_012753_130 Hb_001351_080--Hb_012753_130 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_000540_120 Hb_000540_120 Hb_010831_020--Hb_000540_120 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_001052_040 Hb_001052_040 Hb_000886_060--Hb_001052_040 Hb_073973_160 Hb_073973_160 Hb_000886_060--Hb_073973_160 Hb_010584_010 Hb_010584_010 Hb_000886_060--Hb_010584_010 Hb_002002_030 Hb_002002_030 Hb_000886_060--Hb_002002_030 Hb_000331_160 Hb_000331_160 Hb_000886_060--Hb_000331_160 Hb_000261_290 Hb_000261_290 Hb_000886_060--Hb_000261_290 Hb_001691_150--Hb_000525_010 Hb_000025_330 Hb_000025_330 Hb_001691_150--Hb_000025_330 Hb_001691_150--Hb_000665_010 Hb_001691_150--Hb_002739_150 Hb_002837_110 Hb_002837_110 Hb_001691_150--Hb_002837_110 Hb_015354_010 Hb_015354_010 Hb_003038_220--Hb_015354_010 Hb_012760_130 Hb_012760_130 Hb_003038_220--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_003038_220--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_003038_220--Hb_003925_070 Hb_004883_050 Hb_004883_050 Hb_003038_220--Hb_004883_050 Hb_004935_080 Hb_004935_080 Hb_003038_220--Hb_004935_080 Hb_001493_010--Hb_010831_020 Hb_001493_010--Hb_000886_060 Hb_181975_010 Hb_181975_010 Hb_001493_010--Hb_181975_010 Hb_000003_390 Hb_000003_390 Hb_001493_010--Hb_000003_390 Hb_170487_010 Hb_170487_010 Hb_001493_010--Hb_170487_010 Hb_001493_010--Hb_001052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5413 37.329 2.38032 46.4667 27.2014 42.6493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3326 11.8032 3.93157 8.49813 0.161047

CAGE analysis