Hb_000086_140

Information

Type -
Description -
Location Contig86: 101410-104286
Sequence    

Annotation

kegg
ID rcu:RCOM_0500130
description Polysialic acid capsule expression protein kpsF, putative (EC:5.3.1.13)
nr
ID XP_012085302.1
description PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
swissprot
ID Q9M1T1
description Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1
trembl
ID A0A067K2N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17678 PE=3 SV=1
Gene Ontology
ID GO:0019146
description probable arabinose 5-phosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60704: 101643-104323
cDNA
(Sanger)
(ID:Location)		 007_E18.ab1: 102030-104256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_140 0.0 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
2 Hb_000608_050 0.0740158561 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
3 Hb_000733_200 0.0747459845 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
4 Hb_000365_270 0.0870987542 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
5 Hb_017895_040 0.0892574992 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
6 Hb_000221_190 0.0946593886 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
7 Hb_005867_090 0.099838441 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
8 Hb_005765_050 0.1002082105 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
9 Hb_001013_030 0.1010085335 - - GTP-binding protein yptv3, putative [Ricinus communis]
10 Hb_004162_130 0.1025947713 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000832_190 0.1027439791 - - Rab3 [Hevea brasiliensis]
12 Hb_005162_090 0.1031067252 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
13 Hb_000375_350 0.1032499805 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
14 Hb_000220_100 0.104981106 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
15 Hb_000505_130 0.1050683303 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
16 Hb_000309_130 0.105721428 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
17 Hb_003582_070 0.1060189697 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022250_060 0.1070024013 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
19 Hb_005054_080 0.1071336688 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
20 Hb_148121_040 0.1089187557 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_140 Hb_000086_140 Hb_000608_050 Hb_000608_050 Hb_000086_140--Hb_000608_050 Hb_000733_200 Hb_000733_200 Hb_000086_140--Hb_000733_200 Hb_000365_270 Hb_000365_270 Hb_000086_140--Hb_000365_270 Hb_017895_040 Hb_017895_040 Hb_000086_140--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000086_140--Hb_000221_190 Hb_005867_090 Hb_005867_090 Hb_000086_140--Hb_005867_090 Hb_005765_050 Hb_005765_050 Hb_000608_050--Hb_005765_050 Hb_000220_100 Hb_000220_100 Hb_000608_050--Hb_000220_100 Hb_148121_040 Hb_148121_040 Hb_000608_050--Hb_148121_040 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_004078_040 Hb_004078_040 Hb_000608_050--Hb_004078_040 Hb_164010_040 Hb_164010_040 Hb_000733_200--Hb_164010_040 Hb_004162_130 Hb_004162_130 Hb_000733_200--Hb_004162_130 Hb_000733_200--Hb_005867_090 Hb_000733_200--Hb_017895_040 Hb_000733_200--Hb_000221_190 Hb_004108_220 Hb_004108_220 Hb_000365_270--Hb_004108_220 Hb_000603_160 Hb_000603_160 Hb_000365_270--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000365_270--Hb_005653_070 Hb_053709_050 Hb_053709_050 Hb_000365_270--Hb_053709_050 Hb_005563_070 Hb_005563_070 Hb_000365_270--Hb_005563_070 Hb_006846_130 Hb_006846_130 Hb_000365_270--Hb_006846_130 Hb_000375_350 Hb_000375_350 Hb_017895_040--Hb_000375_350 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_005496_140 Hb_005496_140 Hb_017895_040--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_017895_040--Hb_013575_010 Hb_002641_060 Hb_002641_060 Hb_017895_040--Hb_002641_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_007317_010 Hb_007317_010 Hb_005867_090--Hb_007317_010 Hb_005867_090--Hb_164010_040 Hb_001124_010 Hb_001124_010 Hb_005867_090--Hb_001124_010 Hb_001437_150 Hb_001437_150 Hb_005867_090--Hb_001437_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.183 19.1294 32.5392 40.7261 10.2456 14.0289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8375 37.0613 32.4042 10.5311 17.5489

CAGE analysis