Hb_000086_170

Information

Type -
Description -
Location Contig86: 149468-155550
Sequence    

Annotation

kegg
ID rcu:RCOM_0260330
description Serine/threonine-protein kinase, putative (EC:2.7.11.1)
nr
ID XP_012085301.1
description PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
swissprot
ID P49842
description Serine/threonine-protein kinase 19 OS=Homo sapiens GN=STK19 PE=1 SV=2
trembl
ID B9SV33
description Serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_0260330 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60710: 149593-151690 , PASA_asmbl_60712: 150293-155328 , PASA_asmbl_60714: 156458-164346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_170 0.0 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
2 Hb_000270_310 0.0609586342 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
3 Hb_004312_010 0.0685024248 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
4 Hb_161574_020 0.0685235528 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
5 Hb_014720_120 0.0729013886 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
6 Hb_000336_210 0.0739637874 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
7 Hb_002272_050 0.0753009203 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
8 Hb_000300_260 0.0754888208 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
9 Hb_000948_230 0.0766371644 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_000207_150 0.0772910551 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
11 Hb_000297_160 0.0785249761 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
12 Hb_000331_090 0.0786825 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
13 Hb_001959_110 0.0794504661 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
14 Hb_013575_010 0.0796659023 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
15 Hb_171900_090 0.0805487927 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007878_010 0.0819436853 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
17 Hb_000130_270 0.0822742533 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
18 Hb_000173_310 0.0827258366 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
19 Hb_032202_100 0.0847920568 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
20 Hb_002936_010 0.0859772409 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000086_170 Hb_000086_170 Hb_000270_310 Hb_000270_310 Hb_000086_170--Hb_000270_310 Hb_004312_010 Hb_004312_010 Hb_000086_170--Hb_004312_010 Hb_161574_020 Hb_161574_020 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010 Hb_006132_110 Hb_006132_110 Hb_004312_010--Hb_006132_110 Hb_000300_260 Hb_000300_260 Hb_004312_010--Hb_000300_260 Hb_000173_310 Hb_000173_310 Hb_004312_010--Hb_000173_310 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_003213_010 Hb_003213_010 Hb_004312_010--Hb_003213_010 Hb_161574_020--Hb_007878_010 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_161574_020--Hb_001278_100 Hb_000220_010 Hb_000220_010 Hb_014720_120--Hb_000220_010 Hb_002245_030 Hb_002245_030 Hb_014720_120--Hb_002245_030 Hb_120410_010 Hb_120410_010 Hb_014720_120--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_014720_120--Hb_010381_090 Hb_014720_120--Hb_007878_010 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_000875_080 Hb_000875_080 Hb_000336_210--Hb_000875_080 Hb_014834_150 Hb_014834_150 Hb_000336_210--Hb_014834_150 Hb_000336_210--Hb_002272_050 Hb_171900_090 Hb_171900_090 Hb_000336_210--Hb_171900_090 Hb_000297_160 Hb_000297_160 Hb_000336_210--Hb_000297_160 Hb_002272_050--Hb_000875_080 Hb_002272_050--Hb_171900_090 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_002272_050--Hb_000297_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97515 4.29695 6.95752 7.30298 4.56892 3.97631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91418 6.92023 3.3524 3.46585 3.28763

CAGE analysis