Hb_000086_190

Information

Type -
Description -
Location Contig86: 167020-169598
Sequence    

Annotation

kegg
ID csv:101228497
description H/ACA ribonucleoprotein complex subunit 3-like protein-like
nr
ID XP_011651438.1
description PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
swissprot
ID Q93XX8
description H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=2
trembl
ID M0S1K9
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0015030
description h aca ribonucleoprotein complex subunit 3-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60715: 167228-169312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_190 0.0 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
2 Hb_000668_020 0.1169634231 - - -
3 Hb_010368_030 0.117370658 - - BnaA07g35570D [Brassica napus]
4 Hb_012675_080 0.1282291829 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
5 Hb_000289_080 0.1343031561 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006995_010 0.1406622358 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
7 Hb_001396_250 0.1533969294 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
8 Hb_003656_150 0.1536872501 - - -
9 Hb_003029_100 0.155139561 - - -
10 Hb_166480_010 0.1589246033 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
11 Hb_001584_320 0.1601471992 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
12 Hb_000120_190 0.1620637345 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
13 Hb_006198_090 0.1647973733 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
14 Hb_029142_020 0.1672268408 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
15 Hb_014050_010 0.1779232607 - - PREDICTED: histone H3.3-like, partial [Phoenix dactylifera]
16 Hb_002482_060 0.1832265852 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
17 Hb_007763_050 0.1835567543 - - hypothetical protein L484_012752 [Morus notabilis]
18 Hb_124141_010 0.1842805217 - - plant origin recognition complex subunit, putative [Ricinus communis]
19 Hb_001579_260 0.1869228746 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
20 Hb_007534_020 0.1911690139 - - -

Gene co-expression network

sample Hb_000086_190 Hb_000086_190 Hb_000668_020 Hb_000668_020 Hb_000086_190--Hb_000668_020 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_012675_080 Hb_012675_080 Hb_000086_190--Hb_012675_080 Hb_000289_080 Hb_000289_080 Hb_000086_190--Hb_000289_080 Hb_006995_010 Hb_006995_010 Hb_000086_190--Hb_006995_010 Hb_001396_250 Hb_001396_250 Hb_000086_190--Hb_001396_250 Hb_000668_020--Hb_000289_080 Hb_001584_320 Hb_001584_320 Hb_000668_020--Hb_001584_320 Hb_000668_020--Hb_012675_080 Hb_000668_020--Hb_006995_010 Hb_003029_100 Hb_003029_100 Hb_000668_020--Hb_003029_100 Hb_175976_010 Hb_175976_010 Hb_010368_030--Hb_175976_010 Hb_000120_190 Hb_000120_190 Hb_010368_030--Hb_000120_190 Hb_007534_020 Hb_007534_020 Hb_010368_030--Hb_007534_020 Hb_007763_050 Hb_007763_050 Hb_010368_030--Hb_007763_050 Hb_166480_010 Hb_166480_010 Hb_010368_030--Hb_166480_010 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_001396_250 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_000289_080--Hb_006995_010 Hb_000289_080--Hb_003029_100 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000289_080--Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_006995_010--Hb_003029_100 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_001396_250--Hb_000015_070 Hb_011214_100 Hb_011214_100 Hb_001396_250--Hb_011214_100 Hb_001396_250--Hb_166480_010 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47385 0 0.703106 38.3077 1.58818 65.1968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.96695 19.6691 9.27816 3.66962 1.0556

CAGE analysis