Hb_000086_220

Information

Type -
Description -
Location Contig86: 185505-187106
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_220 0.0 - - -
2 Hb_001252_160 0.142289194 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
3 Hb_000061_410 0.1557161576 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_000155_070 0.1705885894 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
5 Hb_005730_020 0.173847872 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
6 Hb_003001_030 0.1741710792 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
7 Hb_004126_010 0.1745365999 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
8 Hb_003627_020 0.1759813987 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
9 Hb_009510_030 0.1833958161 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
10 Hb_003507_020 0.1851598153 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
11 Hb_000976_010 0.188364032 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
12 Hb_032531_030 0.188708365 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_007317_220 0.1889098892 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
14 Hb_002942_030 0.1890971725 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
15 Hb_002835_190 0.191174421 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
16 Hb_002374_340 0.1938686606 - - Two-component response regulator ARR9, putative [Ricinus communis]
17 Hb_003073_130 0.1972248763 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
18 Hb_003656_030 0.1973433021 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
19 Hb_002038_060 0.1976513987 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
20 Hb_002890_220 0.1982668758 - - hypothetical protein JCGZ_24899 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_220 Hb_000086_220 Hb_001252_160 Hb_001252_160 Hb_000086_220--Hb_001252_160 Hb_000061_410 Hb_000061_410 Hb_000086_220--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_000086_220--Hb_000155_070 Hb_005730_020 Hb_005730_020 Hb_000086_220--Hb_005730_020 Hb_003001_030 Hb_003001_030 Hb_000086_220--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_000086_220--Hb_004126_010 Hb_000603_200 Hb_000603_200 Hb_001252_160--Hb_000603_200 Hb_003507_020 Hb_003507_020 Hb_001252_160--Hb_003507_020 Hb_001252_160--Hb_000061_410 Hb_002835_190 Hb_002835_190 Hb_001252_160--Hb_002835_190 Hb_000329_620 Hb_000329_620 Hb_001252_160--Hb_000329_620 Hb_003627_020 Hb_003627_020 Hb_001252_160--Hb_003627_020 Hb_000061_410--Hb_000155_070 Hb_000061_410--Hb_003627_020 Hb_000061_410--Hb_003507_020 Hb_064201_010 Hb_064201_010 Hb_000061_410--Hb_064201_010 Hb_029464_010 Hb_029464_010 Hb_000061_410--Hb_029464_010 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_002301_020 Hb_002301_020 Hb_000155_070--Hb_002301_020 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_000155_070--Hb_003627_020 Hb_000907_100 Hb_000907_100 Hb_000155_070--Hb_000907_100 Hb_000155_070--Hb_004126_010 Hb_002609_260 Hb_002609_260 Hb_005730_020--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_005730_020--Hb_000264_190 Hb_009510_030 Hb_009510_030 Hb_005730_020--Hb_009510_030 Hb_005730_020--Hb_003001_030 Hb_010931_100 Hb_010931_100 Hb_005730_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_005730_020--Hb_000563_540 Hb_003001_030--Hb_009510_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_003001_030--Hb_002609_260 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323579 0.0612134 0 0 0.745742 0.811945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.499092 0.261346 0.430068 0 0

CAGE analysis