Hb_000086_230

Information

Type -
Description -
Location Contig86: 189839-198581
Sequence    

Annotation

kegg
ID rcu:RCOM_0259860
description serine/threonine-protein kinase, putative (EC:2.7.11.13)
nr
ID XP_002529845.1
description serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q6TGC6
description Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1
trembl
ID B9SV26
description Serine/threonine-protein kinase, putative OS=Ricinus communis GN=RCOM_0259860 PE=4 SV=1
Gene Ontology
ID GO:0004697
description serine threonine-protein kinase tricorner-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60722: 197227-198933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_230 0.0 - - serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_001691_140 0.107661573 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
3 Hb_003064_020 0.1219441279 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
4 Hb_000084_160 0.127051607 - - SGNH hydrolase-type esterase superfamily protein, putative [Theobroma cacao]
5 Hb_000099_150 0.129825801 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
6 Hb_000589_120 0.1313524267 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
7 Hb_001828_060 0.1319536878 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
8 Hb_000696_290 0.1350168671 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
9 Hb_000487_230 0.1384586992 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
10 Hb_008554_060 0.141240575 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
11 Hb_000739_300 0.1419055496 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
12 Hb_011671_100 0.1427565411 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_014109_040 0.1433434245 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
14 Hb_002078_140 0.144533282 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
15 Hb_012490_070 0.1448168589 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000183_090 0.1455560021 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
17 Hb_003198_030 0.1463146726 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
18 Hb_000441_110 0.1473366247 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
19 Hb_000258_260 0.1475225432 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
20 Hb_011618_060 0.1481801972 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_230 Hb_000086_230 Hb_001691_140 Hb_001691_140 Hb_000086_230--Hb_001691_140 Hb_003064_020 Hb_003064_020 Hb_000086_230--Hb_003064_020 Hb_000084_160 Hb_000084_160 Hb_000086_230--Hb_000084_160 Hb_000099_150 Hb_000099_150 Hb_000086_230--Hb_000099_150 Hb_000589_120 Hb_000589_120 Hb_000086_230--Hb_000589_120 Hb_001828_060 Hb_001828_060 Hb_000086_230--Hb_001828_060 Hb_001691_140--Hb_000099_150 Hb_002078_140 Hb_002078_140 Hb_001691_140--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020 Hb_008554_060 Hb_008554_060 Hb_003064_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003064_020--Hb_011512_070 Hb_002226_060 Hb_002226_060 Hb_003064_020--Hb_002226_060 Hb_003052_190 Hb_003052_190 Hb_003064_020--Hb_003052_190 Hb_003064_020--Hb_000589_120 Hb_003942_020 Hb_003942_020 Hb_003064_020--Hb_003942_020 Hb_012633_040 Hb_012633_040 Hb_000084_160--Hb_012633_040 Hb_101733_030 Hb_101733_030 Hb_000084_160--Hb_101733_030 Hb_000084_160--Hb_001828_060 Hb_000696_290 Hb_000696_290 Hb_000084_160--Hb_000696_290 Hb_002814_070 Hb_002814_070 Hb_000084_160--Hb_002814_070 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_000099_150--Hb_002078_140 Hb_000684_380 Hb_000684_380 Hb_000589_120--Hb_000684_380 Hb_014109_040 Hb_014109_040 Hb_000589_120--Hb_014109_040 Hb_000589_120--Hb_008554_060 Hb_007576_080 Hb_007576_080 Hb_000589_120--Hb_007576_080 Hb_000417_130 Hb_000417_130 Hb_000589_120--Hb_000417_130 Hb_000905_110 Hb_000905_110 Hb_000589_120--Hb_000905_110 Hb_002534_150 Hb_002534_150 Hb_001828_060--Hb_002534_150 Hb_005725_250 Hb_005725_250 Hb_001828_060--Hb_005725_250 Hb_000059_370 Hb_000059_370 Hb_001828_060--Hb_000059_370 Hb_027380_050 Hb_027380_050 Hb_001828_060--Hb_027380_050 Hb_003780_030 Hb_003780_030 Hb_001828_060--Hb_003780_030 Hb_012490_070 Hb_012490_070 Hb_001828_060--Hb_012490_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.903572 1.38056 1.22135 0.895694 1.68925 0.471228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1968 3.78784 1.17103 1.83373 0.989591

CAGE analysis