Hb_000086_280

Information

Type -
Description -
Location Contig86: 239164-243718
Sequence    

Annotation

kegg
ID pop:POPTR_0002s03720g
description POPTRDRAFT_830068; SNF7 family protein
nr
ID XP_012442915.1
description PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
swissprot
ID Q941D5
description Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
trembl
ID A0A0D2Q4C9
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G254800 PE=4 SV=1
Gene Ontology
ID GO:0000815
description vacuolar protein sorting-associated protein 2 homolog 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_280 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
2 Hb_001085_120 0.072298936 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
3 Hb_001776_160 0.0737406492 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
4 Hb_000638_250 0.0739497968 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000261_140 0.0749347727 - - -
6 Hb_000240_090 0.0762405074 - - Rab5 [Hevea brasiliensis]
7 Hb_000453_120 0.0775657552 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
8 Hb_000120_960 0.0804006138 - - isocitrate dehydrogenase, putative [Ricinus communis]
9 Hb_006831_120 0.0808229871 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
10 Hb_001484_070 0.0812987948 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000175_060 0.0813483543 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
12 Hb_002660_070 0.0816120852 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
13 Hb_028515_010 0.0817529521 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
14 Hb_003077_040 0.0819382747 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
15 Hb_001059_030 0.0841959021 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
16 Hb_021409_030 0.0844201958 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
17 Hb_003540_030 0.0853188604 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
18 Hb_000563_250 0.0854171649 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
19 Hb_004635_100 0.0875939983 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
20 Hb_129204_030 0.0881371467 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_280 Hb_000086_280 Hb_001085_120 Hb_001085_120 Hb_000086_280--Hb_001085_120 Hb_001776_160 Hb_001776_160 Hb_000086_280--Hb_001776_160 Hb_000638_250 Hb_000638_250 Hb_000086_280--Hb_000638_250 Hb_000261_140 Hb_000261_140 Hb_000086_280--Hb_000261_140 Hb_000240_090 Hb_000240_090 Hb_000086_280--Hb_000240_090 Hb_000453_120 Hb_000453_120 Hb_000086_280--Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_027654_050 Hb_027654_050 Hb_001776_160--Hb_027654_050 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000920_110 Hb_000920_110 Hb_000261_140--Hb_000920_110 Hb_000261_140--Hb_001484_070 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_000453_120--Hb_001484_070 Hb_000453_120--Hb_001512_080 Hb_000453_120--Hb_002110_200 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48637 5.60305 9.43794 8.97087 9.3408 7.76619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6534 25.1526 22.818 8.56103 6.69982

CAGE analysis