Hb_000086_380

Information

Type -
Description -
Location Contig86: 290828-296878
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26120g
description POPTRDRAFT_553334; Succinyl-CoA ligase beta-chain family protein
nr
ID XP_012085271.1
description PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
swissprot
ID O82662
description Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1
trembl
ID A0A067JUK1
description Succinyl-CoA ligase subunit beta OS=Jatropha curcas GN=JCGZ_17656 PE=3 SV=1
Gene Ontology
ID GO:0005507
description succinyl- ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_380 0.0 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
2 Hb_004310_130 0.0662881821 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
3 Hb_005291_030 0.0737027017 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
4 Hb_027472_150 0.0796670286 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
5 Hb_021596_030 0.082560259 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
6 Hb_002524_010 0.0832591011 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
7 Hb_001579_320 0.0877672097 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
8 Hb_001489_150 0.0877708054 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
9 Hb_000853_170 0.0887134986 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
10 Hb_007218_080 0.0896153585 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
11 Hb_002303_070 0.0898457988 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
12 Hb_007594_130 0.0901465635 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
13 Hb_004881_020 0.0908303008 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
14 Hb_002728_070 0.0910131889 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
15 Hb_004577_020 0.0913450947 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
16 Hb_150360_030 0.0913715849 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
17 Hb_001842_100 0.0914460623 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
18 Hb_010417_080 0.0925460519 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
19 Hb_011883_010 0.0945975885 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
20 Hb_000329_140 0.0949865471 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_380 Hb_000086_380 Hb_004310_130 Hb_004310_130 Hb_000086_380--Hb_004310_130 Hb_005291_030 Hb_005291_030 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_021596_030 Hb_021596_030 Hb_000086_380--Hb_021596_030 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_001579_320 Hb_001579_320 Hb_000086_380--Hb_001579_320 Hb_007218_080 Hb_007218_080 Hb_004310_130--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_004970_110 Hb_004970_110 Hb_027472_150--Hb_004970_110 Hb_000058_100 Hb_000058_100 Hb_027472_150--Hb_000058_100 Hb_002728_070 Hb_002728_070 Hb_027472_150--Hb_002728_070 Hb_001579_220 Hb_001579_220 Hb_027472_150--Hb_001579_220 Hb_027472_150--Hb_002473_130 Hb_012506_050 Hb_012506_050 Hb_021596_030--Hb_012506_050 Hb_003438_050 Hb_003438_050 Hb_021596_030--Hb_003438_050 Hb_000638_120 Hb_000638_120 Hb_021596_030--Hb_000638_120 Hb_021596_030--Hb_001579_320 Hb_000130_410 Hb_000130_410 Hb_021596_030--Hb_000130_410 Hb_002524_010--Hb_005291_030 Hb_000092_100 Hb_000092_100 Hb_002524_010--Hb_000092_100 Hb_002524_010--Hb_000030_190 Hb_003641_060 Hb_003641_060 Hb_002524_010--Hb_003641_060 Hb_002524_010--Hb_021596_030 Hb_001946_010 Hb_001946_010 Hb_001579_320--Hb_001946_010 Hb_000526_050 Hb_000526_050 Hb_001579_320--Hb_000526_050 Hb_003952_070 Hb_003952_070 Hb_001579_320--Hb_003952_070 Hb_000193_190 Hb_000193_190 Hb_001579_320--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001579_320--Hb_003025_110 Hb_040262_010 Hb_040262_010 Hb_001579_320--Hb_040262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56668 2.24862 1.92164 1.96785 2.77481 4.9303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3064 3.42148 1.73173 2.83945 1.9293

CAGE analysis