Hb_000086_400

Information

Type -
Description -
Location Contig86: 313754-322372
Sequence    

Annotation

kegg
ID rcu:RCOM_0543410
description calmodulin binding protein, putative
nr
ID XP_002526575.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID Q86TV6
description Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3
trembl
ID B9SKQ6
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0543410 PE=4 SV=1
Gene Ontology
ID GO:0005886
description tetratricopeptide repeat protein 7a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60730: 313782-314051 , PASA_asmbl_60731: 314707-320220 , PASA_asmbl_60732: 315677-315855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_400 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_085863_030 0.0489000422 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
3 Hb_000000_250 0.0624102575 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
4 Hb_000510_320 0.0650078544 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
5 Hb_009178_030 0.0751863123 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000175_460 0.0760589117 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_000876_070 0.0760677054 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
8 Hb_019280_040 0.0761524542 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001009_270 0.07733786 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
10 Hb_004254_120 0.080072641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005779_060 0.0812150954 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
12 Hb_008725_260 0.0815598751 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
13 Hb_000062_220 0.0819619322 - - BnaC02g35870D [Brassica napus]
14 Hb_002435_120 0.0828719596 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_016901_010 0.0844062202 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_004586_340 0.0848805672 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
17 Hb_000003_250 0.085075081 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
18 Hb_003996_020 0.0855146331 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001726_020 0.0857427649 - - PREDICTED: endophilin-A1 [Jatropha curcas]
20 Hb_010422_060 0.085787306 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]

Gene co-expression network

sample Hb_000086_400 Hb_000086_400 Hb_085863_030 Hb_085863_030 Hb_000086_400--Hb_085863_030 Hb_000000_250 Hb_000000_250 Hb_000086_400--Hb_000000_250 Hb_000510_320 Hb_000510_320 Hb_000086_400--Hb_000510_320 Hb_009178_030 Hb_009178_030 Hb_000086_400--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000086_400--Hb_000175_460 Hb_000876_070 Hb_000876_070 Hb_000086_400--Hb_000876_070 Hb_085863_030--Hb_009178_030 Hb_000056_240 Hb_000056_240 Hb_085863_030--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_085863_030--Hb_008725_260 Hb_016901_010 Hb_016901_010 Hb_085863_030--Hb_016901_010 Hb_000866_220 Hb_000866_220 Hb_085863_030--Hb_000866_220 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000510_320--Hb_000175_460 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_009178_030--Hb_008725_260 Hb_007532_030 Hb_007532_030 Hb_009178_030--Hb_007532_030 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_000175_460--Hb_002105_040 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000175_460--Hb_000876_070 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9367 8.45575 7.16673 9.04564 11.8622 16.9478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3037 18.5122 23.761 9.76566 7.39347

CAGE analysis