Hb_000086_490

Information

Type -
Description -
Location Contig86: 386202-390707
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25970g
description POPTRDRAFT_553321; hypothetical protein
nr
ID AEE60895.1
description cellulose synthase [Populus tomentosa]
swissprot
ID Q84JA6
description Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1
trembl
ID F6KQG1
description Cellulose synthase OS=Populus tomentosa GN=CesA4 PE=2 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60760: 386196-390710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_490 0.0 - - cellulose synthase [Populus tomentosa]
2 Hb_005523_030 0.0276064406 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
3 Hb_015807_090 0.0334051407 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
4 Hb_005686_040 0.0383796305 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001051_060 0.0408568336 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
6 Hb_000328_030 0.0426464918 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
7 Hb_002078_180 0.0464822527 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
8 Hb_000776_090 0.0486698919 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
9 Hb_042083_010 0.0520375839 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
10 Hb_001935_060 0.0572520628 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
11 Hb_003747_160 0.0572990274 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001377_220 0.0612155575 - - dopamine beta-monooxygenase, putative [Ricinus communis]
13 Hb_000193_320 0.0621142818 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001377_230 0.0625596266 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
15 Hb_002835_360 0.0664730982 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
16 Hb_009476_080 0.0681755111 - - BnaA03g18920D [Brassica napus]
17 Hb_001189_080 0.0689069648 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012633_020 0.070210411 - - laccase, putative [Ricinus communis]
19 Hb_000836_640 0.0715626156 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
20 Hb_010166_010 0.071646829 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_490 Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_000086_490--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_000086_490--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_000086_490--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_000086_490--Hb_001051_060 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_002078_180 Hb_002078_180 Hb_000086_490--Hb_002078_180 Hb_005523_030--Hb_015807_090 Hb_005523_030--Hb_001051_060 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_002078_180 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_002078_180 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_001051_060--Hb_003747_160 Hb_001051_060--Hb_002078_180 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000165_260 Hb_000165_260 Hb_000328_030--Hb_000165_260 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_002078_180--Hb_002835_360 Hb_009476_080 Hb_009476_080 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0527678 8.27245 7.71649 133.008 0.156594 0.0611885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0378746 0.0198702 0.019044 0.456775 87.2532

CAGE analysis