Hb_000086_510

Information

Type -
Description -
Location Contig86: 409579-411017
Sequence    

Annotation

kegg
ID rcu:RCOM_0542930
description Acid phosphatase 1 precursor, putative (EC:3.1.3.2)
nr
ID XP_002526558.1
description Acid phosphatase 1 precursor, putative [Ricinus communis]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9SKN9
description Acid phosphatase 1, putative OS=Ricinus communis GN=RCOM_0542930 PE=4 SV=1
Gene Ontology
ID GO:0003993
description acid phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60764: 409463-410865
cDNA
(Sanger)
(ID:Location)		 053_L12.ab1: 409710-410675

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_510 0.0 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
2 Hb_085829_010 0.0669896734 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
3 Hb_000334_090 0.0845459947 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
4 Hb_165110_010 0.0963635968 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
5 Hb_000320_240 0.101737373 - - multicopper oxidase, putative [Ricinus communis]
6 Hb_000157_020 0.1032141646 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000243_340 0.1054006796 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_000506_050 0.1114378411 - - PREDICTED: thymidine kinase [Jatropha curcas]
9 Hb_005916_040 0.1125456047 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
10 Hb_002304_110 0.1138127593 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
11 Hb_110631_010 0.1141362777 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
12 Hb_004705_060 0.117381223 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
13 Hb_000890_120 0.1179683091 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
14 Hb_006351_040 0.121613167 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000339_050 0.1252674393 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
16 Hb_002601_040 0.1285432863 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
17 Hb_000813_020 0.1333016329 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
18 Hb_009367_070 0.1350732093 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
19 Hb_000568_020 0.1357540867 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
20 Hb_001213_060 0.1370356803 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_510 Hb_000086_510 Hb_085829_010 Hb_085829_010 Hb_000086_510--Hb_085829_010 Hb_000334_090 Hb_000334_090 Hb_000086_510--Hb_000334_090 Hb_165110_010 Hb_165110_010 Hb_000086_510--Hb_165110_010 Hb_000320_240 Hb_000320_240 Hb_000086_510--Hb_000320_240 Hb_000157_020 Hb_000157_020 Hb_000086_510--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_000086_510--Hb_000243_340 Hb_004705_060 Hb_004705_060 Hb_085829_010--Hb_004705_060 Hb_085829_010--Hb_000334_090 Hb_000017_250 Hb_000017_250 Hb_085829_010--Hb_000017_250 Hb_001213_060 Hb_001213_060 Hb_085829_010--Hb_001213_060 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250 Hb_000813_020 Hb_000813_020 Hb_000334_090--Hb_000813_020 Hb_170077_020 Hb_170077_020 Hb_000334_090--Hb_170077_020 Hb_002304_110 Hb_002304_110 Hb_000334_090--Hb_002304_110 Hb_000352_360 Hb_000352_360 Hb_000334_090--Hb_000352_360 Hb_001052_020 Hb_001052_020 Hb_165110_010--Hb_001052_020 Hb_000062_280 Hb_000062_280 Hb_165110_010--Hb_000062_280 Hb_000506_050 Hb_000506_050 Hb_165110_010--Hb_000506_050 Hb_165110_010--Hb_000320_240 Hb_165110_010--Hb_000157_020 Hb_110631_010 Hb_110631_010 Hb_000320_240--Hb_110631_010 Hb_007138_010 Hb_007138_010 Hb_000320_240--Hb_007138_010 Hb_073870_010 Hb_073870_010 Hb_000320_240--Hb_073870_010 Hb_100953_010 Hb_100953_010 Hb_000320_240--Hb_100953_010 Hb_000157_020--Hb_000506_050 Hb_000890_120 Hb_000890_120 Hb_000157_020--Hb_000890_120 Hb_000339_050 Hb_000339_050 Hb_000157_020--Hb_000339_050 Hb_000157_020--Hb_085829_010 Hb_002304_100 Hb_002304_100 Hb_000243_340--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000243_340--Hb_002601_040 Hb_001645_030 Hb_001645_030 Hb_000243_340--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_000243_340--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_000243_340--Hb_000834_130 Hb_000243_340--Hb_000339_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436503 6.38748 45.4375 166.301 0.356435 0.0757955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 24.5482 7.09527

CAGE analysis